Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1023 ATGGTTTTAGCCTCCCAGACAGAGTTACCCCTCAACGAGGATGACTCACAAGACATGGTCATATTCCAAGTTCTCACAGAGGCCAACGCTCTCACCACCACCACCGCCACCACCACCATATTTCCTCCACGTAACACCCACCATACCAGCCCACAACCGGGCCTTCAGCCCACCAGATCCGCCGTCACCGGCAAGAAGCACTACCGGGGCGTGAGGCGGCGACCGTGGGGGAAGTACGCGGCGGAGATCCGGGACTCAGCCCGGCACGGAGCTCGGGTGTGGCTTGGAACGTTCGACACTGCGGAAGAAGCTGCCATGGCTTATGACAGAGCTGCTTTCAGAATGAGAGGTGCTAAGGCTCTCCTTAATTTCCCACCTGATGTTGTCGCTGCTGCTACGTCTTCGTCAAGGAGATTACATAAACGGGATTCTGATTCAACTTTAGTAGATTCCAGATAG 459 0.5556 MVLASQTELPLNEDDSQDMVIFQVLTEANALTTTTATTTIFPPRNTHHTSPQPGLQPTRSAVTGKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFDTAEEAAMAYDRAAFRMRGAKALLNFPPDVVAAATSSSRRLHKRDSDSTLVDSR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1023 152 SMART rav1_2 67 131 IPR001471 GO:0003700|GO:0006355
Dere10g1023 152 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
Dere10g1023 152 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Dere10g1023 152 MobiDBLite consensus disorder prediction 132 152 - -
Dere10g1023 152 ProSiteProfiles AP2/ERF domain profile. 67 125 IPR001471 GO:0003700|GO:0006355
Dere10g1023 152 PANTHER DNA-BINDING DOMAIN 39 134 IPR044808 GO:0003700|GO:0009873
Dere10g1023 152 Gene3D AP2/ERF domain 66 126 IPR036955 GO:0003700|GO:0006355
Dere10g1023 152 CDD AP2 66 127 IPR001471 GO:0003700|GO:0006355
Dere10g1023 152 MobiDBLite consensus disorder prediction 40 67 - -
Dere10g1023 152 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Dere10g1023 152 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Dere10g1023 152 MobiDBLite consensus disorder prediction 136 152 - -
Dere10g1023 152 FunFam Ethylene-responsive transcription factor 2 66 126 - -
Dere10g1023 152 MobiDBLite consensus disorder prediction 40 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1023 Dere-ChrDere10 19161493 19161951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1023 9 142 AP2-EREBP Transcription Factor Family AT5G47220 48.966 1.76e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere10g1023 AP2 2.7e-16 CL0081