Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1017 ATGTTCTCACTACTTTGTCTCATCATCAACACCACTTTAAGTAAGACCGATTCCAAATCCGATAAAGAAGCCCTTCTTGCTTTTAAATCTTCTATAAGCGACCAGTACAATCTCTTGGTTAATTGGTCCACCTCTTCTTCCCATTGCCATTGGGTTGGGGTTACTTGCGATGCTCGCCATCAAAGAGTAAAGATCTTGAGTCTTGGCAAGATGGGTCTTAAGGGCACCATTCCCCCACACCTTGGAAACCTGTCCTTCCTAGCCGAACTTGATCTTCATGCCAATAACTTTCATGGTCAATTGCCGAATGAGTTAGCTCAATTACATAGGTTGGAAAATACTCAATCTGAACAACAACAAATTGAAGGGAGAAATTCCAGTTCTATTCCAAAAGAGATCGGTGATATTCCGAACATAAAATTAATGTACTTTGGTTATAATAAGCTTTCTGGCTCTATACCAAGACATATGGGAAATTTGACTATGCTTCAAAAGTTATATCTTGATACGAATAACTTGGAAGGTTCTATACCAGATGAGATTGGTAATCCTAATAAACTTGAAGAAGTACATTTGGGAATTAACAATTTGAGTGGATCGATTCCTTTCAGTTTGTTCAACATCTCAACCTTGAAAGCCATGCATCTCGGAGACAACTATCTCTCAGGTAGCCTTCCATTGAAATTCGGATGTGGCCTTCCTAACCTAGAACAAATATACTTGTGGGGAAATCAACTTGTTGGAAAAATTCCAGACAGTATAGGCAATGCTTCAATGCTTTTCGAAGCACAGCTTCAAATGAACAAATTCAGTGGGGTTATACCTAATGCACTTGGGAACTTAAGAGATCTCAAATTCCTTCGTCTTGTGGATAATAAGTTGACCACTGATGCTTCTTCTGAAATGAGCTTTCTTACTTCTTTGACGAATTGTAGACAACCGAAAACTCTCAAGTTATCAATGAATCCTTTGCATGCTAGACTTCCCAAGTCCGTTGGAAATTTCTCTGATTCTCTGGAATTTTTCGAGGCATCCTCTTGCGGTATTGATGGTGATATACCATTAGAAATTGGCAATCTTAGTAAATTGGTAACACTAGATTTGGACAACAACAATTTGAATGGATCATTTCCTTCTACAATTAACAAGTTGCAGAATCTTCAAATTTTGAGTCTACAAGACAATGAGCTGCAAGGCTCTATCGGGGATGAGATTTGTCAAGTTACAAGTTTGGGCCTTCTAGGTCTAAGGAAAAATAATTTTTCTGGAGCAATTCCGAAGTGCGTGGGCAATCTTTCCTTTCTAAGGTACCTTTATTTGCAATCTAATCATTTGATTTCTGAGATACCATCTTCATTTTGGAGTCTTATTGACATTCTCGAGGTAAACTTCTCCTCCAATAGTTTGATTAGAAATATTTCGTTTGACATTGGACACCTCAGAGCTCTTACACTATTGGATCTTTCAAGAAATCAAATTTCAGGAACCATTCCAACAACCATTAGTGGCTTGAAAACTTTAGAAACTCTTTCCTTAGCCCATAACAGATTGCAAGGGGATATTCCCAAATCAGTTGGAAATTTGGCGAGTCTAGAATTCTTAGACCTTTCCCAGAATAATTTATCCGGTGAGATCCCTAAGTCTCTAGAGTCACTTGGCTATCTCAAGTTTGCCAATTTTTCTTACAACAGCCTACAAGGAGAGATTCCTAGTGGCGGACCCTTTCAAAATTTGACAGCTGAATCATTCTTGGCGAATAAGGCCCTTTGTGGAAAGCCACAGCTAAAAGTCCCACCGTGTCCAGGCAAAATGAAGCATAAGTCAGCAAAAGATTTACTTTTGGTCAAATACTTATCATCAATCCTGTCAACTATTCTTGTTCTTTCGTGCATAATAATTCTACTATATAAAAGAAAATGGACCAGAGACCAAATTGGAAGGAGCTTTTCAACCTTTGGAACTACAAGAAGGACATCATACTACGAACTTCTACAGGCAACAAATGGGTTCAATGAAAGCAATTTTCTTGGTAGAGGAAGTTTTGGTTCAATATTCAAAGGTGTACTTTCAGATGGGATGACAGTTGCTGTTAAAGTATTTGATTTGGACAATGAAGCAGCATCAAAGAGTTTTGACATAGAATGTGAAGCGATGAGTAATTTGCGACATCGTAATCTGGTCCAGATCATCAGTTGTTGTTCAAATATGGACTTCAGATTTCTTGCAAAGATTGAATATAATGATAGATGTGGCATTTGCATTGGAGTATCTCCACCATGGTTTGCCAAGAGTTGTGGTTCTGATGTGAAGCCTAGCAATATTTTGCTGGATGAAGAAATGGTCGCTCACCTCAGTGACTTCGGCATTGCCAAACTCTTAAATGAAAGGCAATTTGAAACACATACAAAGACATTGGCTACGCTTGGCTATATAGCACCAGAGTATGGATCCAAAGGAATTGTGTCTGCAAAAGGAGATGTATATAGCTATGGCATTGTGCTCATGGAAACATTTACGCGGAAGAAGCCAACAGATGGTATGTTTAACTCTGGGTTAAGCTTGAAAAGTTGGGTTAATGGGTTCATGCCTAATAAAGTGATTCAAGTTGTGGATCCTAATCTATTGCAAGGAGATGAAAAGTATCATGGTATGATAGTATCTTTAGTCTTATCTATACTGAATGTAGCTCTAAATTGTTGTGCAGAATTACCAGAACAGCGATTGAGCATGAAAGATGTAGTAGCTCTCTTAAACAAAATTAAGATCAAATTTTTCGCTGGAGTCTAA 2787 0.3821 MFSLLCLIINTTLSKTDSKSDKEALLAFKSSISDQYNLLVNWSTSSSHCHWVGVTCDARHQRVKILSLGKMGLKGTIPPHLGNLSFLAELDLHANNFHGQLPNELAQLHRLENTQSEQQQIEGRNSSSIPKEIGDIPNIKLMYFGYNKLSGSIPRHMGNLTMLQKLYLDTNNLEGSIPDEIGNPNKLEEVHLGINNLSGSIPFSLFNISTLKAMHLGDNYLSGSLPLKFGCGLPNLEQIYLWGNQLVGKIPDSIGNASMLFEAQLQMNKFSGVIPNALGNLRDLKFLRLVDNKLTTDASSEMSFLTSLTNCRQPKTLKLSMNPLHARLPKSVGNFSDSLEFFEASSCGIDGDIPLEIGNLSKLVTLDLDNNNLNGSFPSTINKLQNLQILSLQDNELQGSIGDEICQVTSLGLLGLRKNNFSGAIPKCVGNLSFLRYLYLQSNHLISEIPSSFWSLIDILEVNFSSNSLIRNISFDIGHLRALTLLDLSRNQISGTIPTTISGLKTLETLSLAHNRLQGDIPKSVGNLASLEFLDLSQNNLSGEIPKSLESLGYLKFANFSYNSLQGEIPSGGPFQNLTAESFLANKALCGKPQLKVPPCPGKMKHKSAKDLLLVKYLSSILSTILVLSCIIILLYKRKWTRDQIGRSFSTFGTTRRTSYYELLQATNGFNESNFLGRGSFGSIFKGVLSDGMTVAVKVFDLDNEAASKSFDIECEAMSNLRHRNLVQIISCCSNMDFRFLAKIEYNDRCGICIGVSPPWFAKSCGSDVKPSNILLDEEMVAHLSDFGIAKLLNERQFETHTKTLATLGYIAPEYGSKGIVSAKGDVYSYGIVLMETFTRKKPTDGMFNSGLSLKSWVNGFMPNKVIQVVDPNLLQGDEKYHGMIVSLVLSILNVALNCCAELPEQRLSMKDVVALLNKIKIKFFAGV 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1017 928 PRINTS Leucine-rich repeat signature 528 541 - -
Dere10g1017 928 PRINTS Leucine-rich repeat signature 483 496 - -
Dere10g1017 928 SUPERFAMILY L domain-like 42 329 - -
Dere10g1017 928 PANTHER OS04G0122200 PROTEIN 186 924 - -
Dere10g1017 928 Pfam Leucine rich repeat 482 541 IPR001611 GO:0005515
Dere10g1017 928 Gene3D Ribonuclease Inhibitor 19 126 IPR032675 -
Dere10g1017 928 Gene3D Ribonuclease Inhibitor 311 601 IPR032675 -
Dere10g1017 928 Gene3D Phosphorylase Kinase; domain 1 652 744 - -
Dere10g1017 928 Gene3D Transferase(Phosphotransferase) domain 1 745 922 - -
Dere10g1017 928 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 57 309 - -
Dere10g1017 928 FunFam Serine-threonine protein kinase plant-type 651 746 - -
Dere10g1017 928 SMART serkin_6 670 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1017 928 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Dere10g1017 928 SUPERFAMILY Protein kinase-like (PK-like) 646 922 IPR011009 -
Dere10g1017 928 Gene3D Ribonuclease Inhibitor 127 310 IPR032675 -
Dere10g1017 928 ProSiteProfiles Leucine-rich repeat profile. 530 553 IPR001611 GO:0005515
Dere10g1017 928 Pfam Protein kinase domain 671 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1017 928 Pfam Protein kinase domain 767 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1017 928 SMART LRR_typ_2 384 408 IPR003591 -
Dere10g1017 928 SMART LRR_typ_2 160 184 IPR003591 -
Dere10g1017 928 SMART LRR_typ_2 84 108 IPR003591 -
Dere10g1017 928 SMART LRR_typ_2 432 456 IPR003591 -
Dere10g1017 928 SMART LRR_typ_2 480 504 IPR003591 -
Dere10g1017 928 SMART LRR_typ_2 528 552 IPR003591 -
Dere10g1017 928 SMART LRR_typ_2 233 257 IPR003591 -
Dere10g1017 928 SMART LRR_typ_2 360 383 IPR003591 -
Dere10g1017 928 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 310 604 - -
Dere10g1017 928 ProSiteProfiles Protein kinase domain profile. 670 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1017 928 Pfam Leucine Rich Repeat 435 456 IPR001611 GO:0005515
Dere10g1017 928 SUPERFAMILY RNI-like 231 571 - -
Dere10g1017 928 Pfam Leucine rich repeat N-terminal domain 19 57 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1017 Dere-ChrDere10 19072929 19079586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1017 19 925 Receptor kinase-like Gene Family AT3G47570 36.864 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere10g1017 Pkinase 4.1e-17 CL0016