Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1008 ATGAGTTCATTTGCAACCGACCCAGCAAATGAGTTCTTTGAAGCTCAAGCTCACTTGTATAAACACATCTTTTGCTATCTGAACTGCATGGTTCTCAAGTGTGCCGTTCAGCTAAGCATTCCAGACATAATTCACAACCATGGCCAACCCATTACCATTCCTGACTTGATCTCCAATCTTCAAGTTCACCCATCCAAAACTACCTATGTGAAGAGGCTCGTGCGCTTACTGGTGCACAATGGCTTCTTATCTGAAACCAAAGTCTACGAGGAAGACGAAGAAGAAAAGGTGGCATACACTCTCACACCTTCTTCTAAATTCCTCATCAAAGGCAACGAACCGTGCCTAACACCAATGGTTCTAGGATTCATTGACACTGGTATGATTGGTTCATTTGATTTTCTGGGACGGTGGTTCAAAGGGGAGGAGAAAACTATAGTTGAGAGTGCCTTTGGGGTGGAGTGTTGGGATCTACTCAAACGTGATCCTCACTATATGAGGTCTTTTAACGAAGGAATGGCTAGTGATTCCCAAATGATCAACATGGTACTTAAAGACTGCAAGTCAGTTTTCAAAGGCCTGGAATCCATAGTTGACGTAGGTGGTGGCATAGGCACTACATGCAGGATCCTCTCTGAGGCATATCCTGATCTGAAATGCATAGTGTTTGATCTTCCACAAGTTGTGGAAAACTTGCCAGGATCCAAGAACTTGAGCTATGTTGGTGGCAGCATGTTTGAATCCGTTCCTTCTGCCGATGCTTGGGTATTACACAACTGGGACGATGAGAATTCCATAAAGATATTAAACAAATGTAAGGAAGCCATCTCAGACAAAGGCGAAGGGAGAAAGGTGGTCATCATAGACGCAGTGATAAACGAGAAGAAAGACAAGCGTGAAATGACTGAAGTGAAGCTCTTGTGTGACATTTTGATGATGGGTGTCCTTACTGGAAAAGAGAGAAATGAAAAAGAATGGGAGAACCTTCTTCTCGCGGCAGGCTTTAAACGTTACAAGATTACTCCTCTTTTTGGTTTCAGGTCAATGATTGAAGCTTATCCTTAA 1065 0.431 MSSFATDPANEFFEAQAHLYKHIFCYLNCMVLKCAVQLSIPDIIHNHGQPITIPDLISNLQVHPSKTTYVKRLVRLLVHNGFLSETKVYEEDEEEKVAYTLTPSSKFLIKGNEPCLTPMVLGFIDTGMIGSFDFLGRWFKGEEKTIVESAFGVECWDLLKRDPHYMRSFNEGMASDSQMINMVLKDCKSVFKGLESIVDVGGGIGTTCRILSEAYPDLKCIVFDLPQVVENLPGSKNLSYVGGSMFESVPSADAWVLHNWDDENSIKILNKCKEAISDKGEGRKVVIIDAVINEKKDKREMTEVKLLCDILMMGVLTGKERNEKEWENLLLAAGFKRYKITPLFGFRSMIEAYP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1008 354 Gene3D - 2 108 IPR036388 -
Dere10g1008 354 PANTHER O-METHYLTRANSFERASE 13 339 IPR016461 GO:0008168
Dere10g1008 354 FunFam O-methyltransferase ZRP4 110 354 - -
Dere10g1008 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 354 IPR016461 GO:0008168
Dere10g1008 354 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Dere10g1008 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 353 IPR029063 -
Dere10g1008 354 Pfam O-methyltransferase domain 135 336 IPR001077 GO:0008171
Dere10g1008 354 Gene3D Vaccinia Virus protein VP39 109 354 IPR029063 -
Dere10g1008 354 FunFam Coniferyl alcohol 9-O-methyltransferase 2 108 - -
Dere10g1008 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Dere10g1008 354 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1008 Dere-ChrDere10 18941680 18942861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1008 30 340 Monolignol Biosynthesis Gene Families AT5G54160 31.889 6.30e-48 164