Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1005 ATGGAAGACAAGCAAGACCAGAGAGGAGAAGACTTGTTTCAGGCTCAAGCTCACTTGTACAAGCACATGTTCAGTTTTGTAGATTCCATGTGCCTTAAAAGTGCCCTTCAATTGGGCATACCAGACATAATCTACAACCATGGCCAACCCATCACTCTATCTGAGTTGGTCTCAGCACTTAAGATTGACCCTTCAAGGTCTAATTATCTCCACAGGCTCATGCGCTTGCTGGTGCACTTTGGCCTTTTTGCTTCCACCAAAATCCCCAAAGAAGAAGATGAAGTTACATATGATCTCACACCATCCTCTAGGCTTCTCCTCAAAGGCAACATTCCCAGCTTGTTTGCTTATTCTCAAGCAGTGTTTCATCCTGCAGTAATGAACCCATGTAAGTTCTTGGGAGACTGGCTTCATAGTAACGGAGATAGTACAGCTTTTGAAACTGCCTTTAGCATGGAGTTCTGGAGGTATGGAAGCAAGAACGCTGAGTTTAGTGCAGTGTTCAATGAGGGTATGGTTAGTGACTCTGGAATGATGAAGCTGGTAATGAAAGACAGTGAATCAGTGTTTCTGGGTTTGAACTCTTTGGTTGATGTTGGGGGTGGAAAGGGAGCTACAGCAATGATCATTTCTGAGGCATTTCCAGATTTGAAGTGCACAGTGATGGATCTTCCTCATGTTGTTGCAGATATGACAGATAGTGGCAGTGTGAAGTTTGTAGGAGGTGATATGTTTCAGTGTATTCCTTCAGCGGATGCCATTCTTCTCAAGATGGTTTTGCACACTTTGACTGATGAAGACTGTGAGAGGATACTAAAGAAGTGCAGGGAAGCTACTTCAAGCAGAGGCAAGCAAGGAAAAGTGATTATCATAGACATGGTGATAAATGAAGAAAAGGACAATCATGAAATGACAGAAGTGAAGCTGTATTTCGATGTGCTGATGATGTCTTTGGTCAACGGAAAAGAGAGAGACGAACAAGAATGGGAGAAACTGTTCTTAAAGGCTGGATTTAGTCACTACAAGATAACACCTATTTTAGGTGTAAGGTCTCTCATTGAGCGGTGTTGGGATGCCACTTGGAGTGGTCTTCTCCCGCTAAAGTTCCTGCACCTGATAGTGCACAATGGAATTTTTGCCACAACAAAAGTTCAAGACAACAGACAAGAGGAAGAAGAAGATGAAGCCTATGTTCTAAGTCCTTCATCCAAACTTCTCAAAGGCAAGGAGCCTTGTTTGTCCTCAGTAGTTCTGGAATCACTTATGCCACATCTGCTGAATATGTGGCATTCTTCTAAGAACTGGTTTTATGGGGACAAGGAGATGTTTCTGTTTGAGAGTGCTTCAGGGATGAGTTATTGGGATTATATTAGCCAGAATCCCAAACTGATGAATTCATTTGATGAAGTGGAGGTGGCTGATTCCCAAATGCTGAAGTTGGCTCTCAGAGATTGCAAACAAGTTATTGGGTGTTTGGGTTCCTTAGTTAACGTAGGAGGCGGGACTGGAACTGTAGCAAAGCTTATCTGTGACTGTGAAGCATTTCCTGAGTTGAAATGCATAGTGTTTGATCTACCACATGTTGTGGCTAACTTGCCACAAAGTCAAAATTTGAGTTATGTTGGGGGAGATATGTTTAAATCTATTCCTTCTACTGATGTAGTTCGATTGAAGGTATGTATATCAATTAACATTTGA 1698 0.4223 MEDKQDQRGEDLFQAQAHLYKHMFSFVDSMCLKSALQLGIPDIIYNHGQPITLSELVSALKIDPSRSNYLHRLMRLLVHFGLFASTKIPKEEDEVTYDLTPSSRLLLKGNIPSLFAYSQAVFHPAVMNPCKFLGDWLHSNGDSTAFETAFSMEFWRYGSKNAEFSAVFNEGMVSDSGMMKLVMKDSESVFLGLNSLVDVGGGKGATAMIISEAFPDLKCTVMDLPHVVADMTDSGSVKFVGGDMFQCIPSADAILLKMVLHTLTDEDCERILKKCREATSSRGKQGKVIIIDMVINEEKDNHEMTEVKLYFDVLMMSLVNGKERDEQEWEKLFLKAGFSHYKITPILGVRSLIERCWDATWSGLLPLKFLHLIVHNGIFATTKVQDNRQEEEEDEAYVLSPSSKLLKGKEPCLSSVVLESLMPHLLNMWHSSKNWFYGDKEMFLFESASGMSYWDYISQNPKLMNSFDEVEVADSQMLKLALRDCKQVIGCLGSLVNVGGGTGTVAKLICDCEAFPELKCIVFDLPHVVANLPQSQNLSYVGGDMFKSIPSTDVVRLKVCISINI 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1005 565 Pfam O-methyltransferase domain 429 559 IPR001077 GO:0008171
Dere10g1005 565 Pfam O-methyltransferase domain 133 339 IPR001077 GO:0008171
Dere10g1005 565 Gene3D Vaccinia Virus protein VP39 407 562 IPR029063 -
Dere10g1005 565 Gene3D Vaccinia Virus protein VP39 108 356 IPR029063 -
Dere10g1005 565 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Dere10g1005 565 SUPERFAMILY "Winged helix" DNA-binding domain 9 109 IPR036390 -
Dere10g1005 565 Gene3D - 2 106 IPR036388 -
Dere10g1005 565 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 368 565 IPR016461 GO:0008168
Dere10g1005 565 PANTHER O-METHYLTRANSFERASE 13 342 IPR016461 GO:0008168
Dere10g1005 565 FunFam O-methyltransferase ZRP4 109 356 - -
Dere10g1005 565 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 354 IPR029063 -
Dere10g1005 565 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 412 559 IPR029063 -
Dere10g1005 565 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Dere10g1005 565 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1005 Dere-ChrDere10 18881305 18888160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1005 394 560 Monolignol Biosynthesis Gene Families AT5G54160 32.164 2.04e-15 76.3