Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1003 ATGGGGGGTTTGATCGATCTCAACACTACGGAGGACGATGAAACGCCGTCGTCTGTTTCCTCGGCTTCTTCTTCGTCCTCTCACTCGGGTATTATAAGCACTTCGGGTCCTTCTCCTAACGCTGTGTGCTTGGAGCTATGGCACGCGTGTGCGGGTCCAATGATCTCGTTGCCGAAGAAAGGAAGCGTGGTTGTGTACTTCCCACAGGGACAATTTGAACAGCAGCTTCGGGATTTTGCGGTCGATGCCTATAATATTAAAATCCCATCTCATGTGTTCTGTCGCGTAGCAGATGTTAAGCTTCATGCAGAAGAAGGGAGCGATGAAGTTTATTGCCAGGTCTCGCTGGTTCCTGAGAGTGAGCAAGTGGAGCGAAAACTGCCAAAAGGGGAACTTGATGCTGATGGTGAAGAGGAGAATACTGATGCTGTGGTGAAGTCCACAACACCCCACATGTTCTGCAAGACTCTGACTGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTACCTCGTCGCGCTGCTGAAGATTGTTTTCCTCCCCTGGATTACAACCAACAAAGACCTTCACAGGAGCTAGTGGCAAAGGATCTGCATGGTCTGGAATGGAGGTTCCGACATATTTACAGGGGTCAACCAAGGAGACATTTGCTCACAACTGGATGGAGTGCATTTGTAAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTGTTGTTTCTTAGGGGTGAGGATGGAGAACTGAGATTGGGAGTTCGTAGGGCTGCACAATTGAAAAGTGGTGGTACTTTATCAGTGCCCTCTGCCCGGCAGTTGAATCCTAGCACTCTTATGGATGTGGTTAATGCTTTATCTACAAAATGTGCCTTTAATGTGTACTATAATCCAAGGGTTGGCTCATCGGGATTCGTAATACCCCTTCACAAATTCTTAAGGAGCCTTGACCATTCATATTTAGTTGGAATGAGGTTCAGAGTGCGTTTTGAAAGTGAAGAAACTGCAGAGAGAAGGTGCACTGGATTAATCGTTGGAATGAGTGACGCAGATCCCGTTAAGTGGCCTGGATCAAAATGGAAATGCCTACTGGTAAGGTGGGATGACATAGAAGCCACTAGGCATGATAGGGTTTCCCCTTGGGAGATTGAGCCATCTGGTTCTGCTTCCCCTTCCAATAATTGGATGGCAACTAGTTTGAAGAGGAACAGAATTGGGTTGCCTTCAGAAAAACCTGAATTTCCAGTCCCCAATGGGATTGGAGCATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATATTGGGCATTCATACCCCATTTGATGGTGTCAATGCTCAAAGTCACCAGTTATCTGAAACAAGCAGGTGTTATCCTGGTTCAAACTGTTCTGGAATTGTTGCAACAGGAAATATTGTCAGAGTTCCACAAATGAATTCTGACATTTCCTGCCAAGGCATAGGCTTTAGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATACGTCCAAGCCAACCATATAGAAGAACCTTGTCTGTTGACGAGGCTCGTAGAAATGGTTGCTTTGGAGTTTTTGATGGTTGTCAATTGCTGGGCTCCAGAAATGGATGGTCAACCCAGATGCCGGACAATTCTGCCAATCTGCATCCATCGGGGCAAGTTTCATCCCCGTCATCTGTTTTGATGTTCCAGCAAGCAGTCAATCCAGGTCCCAACTATGATTATGGTAACAAAAGTAATCAAGAGAGAAAAATGCAGCGCCATGGTTCATATGCTTCTGAAGTGAACGGTAGAAAATTTGCATTATCCTCATCTTATGAGCATGTTCTCTGTGGGCAAGTTCAGGAAGGAACAAATTCTTTTGGTATGCCAAATTTGCATAATCAACTGGTCACAGCACGTTCTGATGATTGTCTCTCGCCACTGAGAGGTGGTCAAGAGTTGGTTTCCTCGTGTAAAAGTAGCTGCAGACTCTTTGGTTTTTCACTAACTGAGGAAAATCATATTGCACATAAAGAAGCAAGCTCCTCTACAATCACTTGTCAATTAAATTCTGGACCATCCTTTCCAAGACATGTTGGGGATGAGCTTCAGCTAGGGCATTCTCTCAGGAGTAAGGCGGCTGGAAGCAACTGTACCAAAGGTGTAGTGCGGTATTGA 2178 0.4559 MGGLIDLNTTEDDETPSSVSSASSSSSHSGIISTSGPSPNAVCLELWHACAGPMISLPKKGSVVVYFPQGQFEQQLRDFAVDAYNIKIPSHVFCRVADVKLHAEEGSDEVYCQVSLVPESEQVERKLPKGELDADGEEENTDAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKSGGTLSVPSARQLNPSTLMDVVNALSTKCAFNVYYNPRVGSSGFVIPLHKFLRSLDHSYLVGMRFRVRFESEETAERRCTGLIVGMSDADPVKWPGSKWKCLLVRWDDIEATRHDRVSPWEIEPSGSASPSNNWMATSLKRNRIGLPSEKPEFPVPNGIGASDFGESLRFRKVLQGQEILGIHTPFDGVNAQSHQLSETSRCYPGSNCSGIVATGNIVRVPQMNSDISCQGIGFSESFRFQKVLQGQEIRPSQPYRRTLSVDEARRNGCFGVFDGCQLLGSRNGWSTQMPDNSANLHPSGQVSSPSSVLMFQQAVNPGPNYDYGNKSNQERKMQRHGSYASEVNGRKFALSSSYEHVLCGQVQEGTNSFGMPNLHNQLVTARSDDCLSPLRGGQELVSSCKSSCRLFGFSLTEENHIAHKEASSSTITCQLNSGPSFPRHVGDELQLGHSLRSKAAGSNCTKGVVRY 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1003 725 CDD B3_DNA 151 253 IPR003340 GO:0003677
Dere10g1003 725 Gene3D - 317 390 - -
Dere10g1003 725 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
Dere10g1003 725 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 681 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere10g1003 725 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Dere10g1003 725 Pfam Auxin response factor 280 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere10g1003 725 FunFam Auxin response factor 316 387 - -
Dere10g1003 725 FunFam Auxin response factor 151 255 - -
Dere10g1003 725 SMART B3_2 153 255 IPR003340 GO:0003677
Dere10g1003 725 Gene3D - 151 255 IPR015300 -
Dere10g1003 725 MobiDBLite consensus disorder prediction 1 33 - -
Dere10g1003 725 MobiDBLite consensus disorder prediction 10 33 - -
Dere10g1003 725 SUPERFAMILY DNA-binding pseudobarrel domain 145 259 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1003 Dere-ChrDere10 18842346 18852263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1003 38 690 B3 DNA Binding Superfamily AT5G60450 42.579 7.48e-146 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere10g1003 B3 4.8e-22 CL0405