Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0978 ATGGAAACAAGCAGAGCTGAGGGAAAGAGGAACTTGAGGTACAAGAAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGTAGAGGAAGACGATGAAGAGGAAGAGACTGAGCTTGGCTCTGCAGAAGAACATGGCAGAAAGAAGAGGGCTATGGCAGATGTATACAGCAAGAGAGGGTCCAGACTAGGAGGCTCGTCGGCGCCACCTTACTGTCAGGTCGACGGTTGCAATACCGATCTAAGCGGCGCCAAACAGTATCACCGGCGACACAAGGTTTGTGAGTACCATGCCAAGGATCCAGCCGTACTCATCGCAGGGCTGCAGCAACGGTTTTGCCAGCAATGCAGCAGATTTCATGAGCTAGCAGAATTTGATAACTCAAAAAGGAGTTGCAGAAGGCGACTGGCAGGACATAACGAGAGGCGTCGGAAGATTGCATCTGATTATCAGGGAGAAGGCTATCATTCATGA 471 0.5117 METSRAEGKRNLRYKKEEEEEEEEEEVEEDDEEEETELGSAEEHGRKKRAMADVYSKRGSRLGGSSAPPYCQVDGCNTDLSGAKQYHRRHKVCEYHAKDPAVLIAGLQQRFCQQCSRFHELAEFDNSKRSCRRRLAGHNERRRKIASDYQGEGYHS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0978 156 Pfam SBP domain 71 144 IPR004333 GO:0003677
Dere10g0978 156 PIRSF SBP 1 156 IPR017238 GO:0003677|GO:0003700|GO:0009908
Dere10g0978 156 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Dere10g0978 156 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 144 IPR044817 GO:0003677
Dere10g0978 156 MobiDBLite consensus disorder prediction 1 52 - -
Dere10g0978 156 MobiDBLite consensus disorder prediction 1 17 - -
Dere10g0978 156 FunFam Squamosa promoter-binding-like protein 14 62 132 - -
Dere10g0978 156 MobiDBLite consensus disorder prediction 18 38 - -
Dere10g0978 156 SUPERFAMILY SBT domain 69 148 IPR036893 GO:0003677|GO:0005634
Dere10g0978 156 Gene3D - 62 132 IPR036893 GO:0003677|GO:0005634
Dere10g0978 156 Coils Coil 9 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0978 Dere-ChrDere10 18375097 18377586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0978 64 148 SBP-box Gene Family AT2G33810 68.235 4.60e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere10g0978 SBP 2.8e-34 No_clan