Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0935 ATGAAGAAGTGCGAGCTCTGCAATTCTCCGGCAAAAGTGTACTGTGAATCAGACCAGGCCACTCTGTGTTGGGTTTGCGATTCCAAGGTTCATAGTGCTAATTTTCTCGTCACCAAGCACTCCAGAATCCTTCTTTGCCATATTTGTCAGTCTCTAACTCCTTGGCATGGCTCTGGACCCAAGTTTGTGCCCACCATGTCTGTTTGTAATGATTGTGTTAGCAGCAATAATGAAGGGTTCAAGGAACAGAACGACGAAGATCATGATGATGAGGAAGATGATGATGATGACAGAGACGACAGTGGTGATGATGGTGATGAAAGTGGAGAGAAAGAAGAGGAAGAAGATGATGAAGAAGACAATCAAGTGGTTCCATGGCAATCTACACCACCTCCTTCTGTTTCTAGTTCATCAAGCAGTTCAAATTATTCTTCAAGATTTTCAGATTAG 450 0.4311 MKKCELCNSPAKVYCESDQATLCWVCDSKVHSANFLVTKHSRILLCHICQSLTPWHGSGPKFVPTMSVCNDCVSSNNEGFKEQNDEDHDDEEDDDDDRDDSGDDGDESGEKEEEEDDEEDNQVVPWQSTPPPSVSSSSSSSNYSSRFSD 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0935 149 CDD Bbox1_BBX-like 3 45 - -
Dere10g0935 149 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Dere10g0935 149 Gene3D Classic Zinc Finger 1 34 - -
Dere10g0935 149 MobiDBLite consensus disorder prediction 84 122 - -
Dere10g0935 149 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 145 - -
Dere10g0935 149 MobiDBLite consensus disorder prediction 77 149 - -
Dere10g0935 149 MobiDBLite consensus disorder prediction 123 149 - -
Dere10g0935 149 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Dere10g0935 149 SMART bboxneu5 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0935 Dere-ChrDere10 17408347 17408796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0935 2 103 C2C2-CO-like Transcription Factor Family AT4G27310 52.252 1.11e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere10g0935 zf-B_box 3.8e-08 No_clan