Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0929 ATGGAGGAGGAGGAGGCTTTGCCAGACCATCTGCGCTGTAGCCGCACCGACGGCCGACAATGGCGGTGCCGTCGGAGAGTCATGGAGAATCTGAGGCTGTGTGAGATTCACTATCTTCAGGGTCGTCATCGGCAATACAAGGAGAAGGTCCCGGAGTCGCTGAAGCTTCAGAGGAAGCGAAAAAAGGGGCATGATAATGACAAGAACGACTCTGTTGTTGTGGACAATGTTGAAATTAGGGCACCGAAAGTGGGGAAGATAGCGAAGCTGATGAAGAAGAGGCGGAAATTCTCGGATTCTTCAGAAGCATTGGATGCTCATCGTGTGAAGAAAAAGGCGCTGAAGCAAGGCGATATGCAGTTGGAGTTGATTAGGATGGTTCTGAAGAGGGAGGTTGAGAAGAGGAAGAAGAAGCAGGGAGAGAAAAGGAAGAAAAAGCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTTCATTACAGTGAGGGAGAGTTGACTAGAGAATTGCCCAACGGTGTAATGGCAATCTCTCCGGCATCGACGCCACAAGATTACAACAATGTGGGTTCCCATTGTGATATTAAAGTAGGGGATGATTATAAAGCAATTACACCACGTTACTTCAGGTCCAAGAATGTTGAGAGGCTTCCCGCTGGCAAGTTGCAGGTAGTGCCTTTTGGGCGAAACTTGAAGAAGGGTAGGAGGAAGAAGTGCCATTGGTGCCAGAGAAGCGATTCTTGGAATCTAATAAAGTGTTCAAGCTGTCATAAAGAATTCTTTTGCATGGATTGTATCAAAGAACGGTACTTTGATACCCAAAATGAAGTTAAGATGGCATGCCCAGTTTGTCGAGGAACTTGCTCCTGTAAAGACTGCTTGGCAAGTCAATGTAAAGACAGTGAAAGTAAGGGAAAAGAACCTCTGATATTCTCATCAAGCAGGTTGAGTTTGGCTGCAATGAACAAAATTGCTGGTAATCTCTCCTCCACTGATTCTATTAAGAAAATTAATAATTTTCTTGTGCTTCTTCGTGACCAGTATAATGCTTGTCTCAGCAATCACTGCAAAACGCCAATTTTGGATCTCCATAGAAGCTGCTCTAGTTGTTCTTATAGCATTTGCTTAAGTTGTTGTCATGAATTAAGTCAAGGAAGCATCTCTGGAAAAAGTAGCTTGTCTTTGTCCAACCTACCCAATAAAATGAAAGCTGGCATTGCCACTGAAAAACAACTTGTGGATAAGGTCGTTTCTAATGGCAGTTCGACTGCTACTTCATCATCACTGGATTGGACAGTATGTAATGGTACTGGCAGTGTCTCGTGCCCACCCATGGAGCTTGGCGGTTGTGGTGATAGTCTCCTTGATTTGAGATGTGTTTTCCCCTTAAGTTGGATCAAAGAGATGGAAGTAAAAGCAGAAGAACTTGTTTGCTACTATGACTTTCCTGAAATTTTGGATAAAAGTTCAAGCTGCTTGCTTTGTCTTAATACAGATCATAAAATTGATAAATATAAGCAGTGGCAAGAAGCAGCTCTAAGAGAAGATTCAAATGATAATTATTTGTTTTATCCCACCGTTTTGGATGTCAGTCAGGATAATTTTGAACACTTTCAGAAGCACTGGGGAAAAGGCCATCCAGTAGTAGTGCGAGATGTGTTACAGAGTAAATCAAGTCACAGTTGGGATCCACTGGTCATGTTCTGTGCTTATCTTGAGAGGAGTATTATAAGATATGAGAATGATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTAGAAATTAACATTAGGCAGTATTTTACTGGGTCTCTTAGATGTCAGCCTCAGAGAAATACTTGGCATGAGATGCTGAAATTGAAGGGTTGGCTGTCTTCCCAGCTATTCAAAGAACAGTTTCCAACTCATTTTGCTGAAGTTATTGATGCTCTTCCACTCCAAGAATACATGAATCCCAGATCTGGTCTTCTGAATTTAGCTGCAAATTTGCCGCAAGGGAGCGCAAAACATGACATAGGGCCATTTGTCTATATTTCATATGGCTGTGCTGATGAACAAGCTGATTCTGTAACAAAACTCTGTTTTGACTCGTATGATGTGTTAGAGATCTCATCTGAAGTAATACGTGTTTGCATGGAACATGAGGACTCCCTGCCTCTTGTTAATATCATGGCCCATTCCGCAGATGTCCCTCTCTCTACGGAACAGCTTACTAAAATAAGGAAGTTACTGAAAAAGCACAGAACTATGTGTCAAAGGGAGTCTTCTAAAATTACTACTGAGCAGATAAAGGGACAAAGTGCAAAAAGAAACTCATTATTGCATGCTGAAGACATGGAACAAAAGGGATTGCAGAGTATGGTTAGAGAAGAAATGGACTTCTTCCGGAGAGTGAATAGAACAACTTGCATCTCTACTGAGGCAAGAAATGCCGCTAGTCAGAGTACGGACAGCAATATTTCCCAGGGTGGAGAATGTGATTCAGATTCAGATTCTGATTCTGATTCTGAACCCACTGTACTTCATGGGACTGTTCAGAGCGCTGAATTATCTACACACTATAATCATAGGAATTCCTATGAAAGCTCAAACAATGATAGAAATAAAAAGCTTGGTGAGCATTCTGGCGCCCAGTGGGATGTATTTCGCAGACAAGATGTTCCAAAGCTAATAGAATACCTTAAAAGACATTGTATTGAATTTTCTCATACCCAGGACTATCGAAAGGAGATGATTCACCCAATTCTAGATCAGAGCTTCTTTCTTGACAATACTCACAAAATGAGGCTTAAGGAGGAGTTTCAAATTGAACCGTGGACTTTCGAGCAACATGTTGGGGAAGCTGTCATCATCCCTGCTGGATGTCCATACCAGATCAAGAATCCTAAGTGTTGTGTTCATGTGGTGCTTGATTTTGTGTCCCCTGAAAATGTTACCCAGTGTATCCAGTTGATTGATGAAATCCGTTTGCTACCAAAAGGACATAAAGCAAAAGTTGACAAGCTTGAGGTGAAGAAAATGGCCCTTTACGGCATGAGTACAGCAATAAAAGAAATACGAGATCTTACCTGCAAAACGTGA 3081 0.4223 MEEEEALPDHLRCSRTDGRQWRCRRRVMENLRLCEIHYLQGRHRQYKEKVPESLKLQRKRKKGHDNDKNDSVVVDNVEIRAPKVGKIAKLMKKRRKFSDSSEALDAHRVKKKALKQGDMQLELIRMVLKREVEKRKKKQGEKRKKKREEEEEEEEEFHYSEGELTRELPNGVMAISPASTPQDYNNVGSHCDIKVGDDYKAITPRYFRSKNVERLPAGKLQVVPFGRNLKKGRRKKCHWCQRSDSWNLIKCSSCHKEFFCMDCIKERYFDTQNEVKMACPVCRGTCSCKDCLASQCKDSESKGKEPLIFSSSRLSLAAMNKIAGNLSSTDSIKKINNFLVLLRDQYNACLSNHCKTPILDLHRSCSSCSYSICLSCCHELSQGSISGKSSLSLSNLPNKMKAGIATEKQLVDKVVSNGSSTATSSSLDWTVCNGTGSVSCPPMELGGCGDSLLDLRCVFPLSWIKEMEVKAEELVCYYDFPEILDKSSSCLLCLNTDHKIDKYKQWQEAALREDSNDNYLFYPTVLDVSQDNFEHFQKHWGKGHPVVVRDVLQSKSSHSWDPLVMFCAYLERSIIRYENDKDLLEACLDWCEVEINIRQYFTGSLRCQPQRNTWHEMLKLKGWLSSQLFKEQFPTHFAEVIDALPLQEYMNPRSGLLNLAANLPQGSAKHDIGPFVYISYGCADEQADSVTKLCFDSYDVLEISSEVIRVCMEHEDSLPLVNIMAHSADVPLSTEQLTKIRKLLKKHRTMCQRESSKITTEQIKGQSAKRNSLLHAEDMEQKGLQSMVREEMDFFRRVNRTTCISTEARNAASQSTDSNISQGGECDSDSDSDSDSEPTVLHGTVQSAELSTHYNHRNSYESSNNDRNKKLGEHSGAQWDVFRRQDVPKLIEYLKRHCIEFSHTQDYRKEMIHPILDQSFFLDNTHKMRLKEEFQIEPWTFEQHVGEAVIIPAGCPYQIKNPKCCVHVVLDFVSPENVTQCIQLIDEIRLLPKGHKAKVDKLEVKKMALYGMSTAIKEIRDLTCKT 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0929 1026 MobiDBLite consensus disorder prediction 809 872 - -
Dere10g0929 1026 SMART cupin_9 633 989 IPR003347 -
Dere10g0929 1026 Pfam WRC 8 49 IPR014977 -
Dere10g0929 1026 Gene3D Cupin 523 998 - -
Dere10g0929 1026 ProSiteProfiles Zinc finger RING-type profile. 237 283 IPR001841 -
Dere10g0929 1026 MobiDBLite consensus disorder prediction 809 827 - -
Dere10g0929 1026 MobiDBLite consensus disorder prediction 47 69 - -
Dere10g0929 1026 Coils Coil 128 156 - -
Dere10g0929 1026 ProSiteProfiles JmjC domain profile. 652 989 IPR003347 -
Dere10g0929 1026 Pfam JmjC domain, hydroxylase 875 972 IPR003347 -
Dere10g0929 1026 MobiDBLite consensus disorder prediction 133 162 - -
Dere10g0929 1026 ProSiteProfiles WRC domain profile. 7 53 IPR014977 -
Dere10g0929 1026 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1024 IPR045109 GO:0032454|GO:0033169
Dere10g0929 1026 MobiDBLite consensus disorder prediction 837 859 - -
Dere10g0929 1026 SUPERFAMILY Clavaminate synthase-like 527 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0929 Dere-ChrDere10 17266783 17272640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0929 8 47 GRF Transcription Factor Family AT2G22840 47.500 4.33e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere10g0929 JmjC 2e-10 CL0029