Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0916 ATGGGCAATGAAGAGAACTCGAGAGAACCGTCCACCGGAGGCCCGAGTTTCAGGCAAGCCGTTGAGTTAATCTCATCCTTGATTTCTCTCTCTCATTCCGTCAGGGTCTTCGTTGGAAAATGGCAACTAATTCGGAACAAACTTGAGGAGCTTCATTCCGGTCTAATAGCCGCCGGAAACTGCGATTCCGGCGAGAACCCATCACTCTGCGGTGTAGTTCCGGCAATTTTGGTCACCGCGAATGAGTGTCACGATCTCGCTCGACGCTGCGTCGATCTTTCTTACAGCGGGAAGCTCCTGATGCAGAGCGATTTGGACGCGATGTTCGGCAAGTTCGATGGCCATGTGAGGAAGTTATCAGAAATATACAAAGCCGGTATTTTAACTCATAGATATGCTCTTATTGTTTCAAGGCCTAGCGTCGGAGCTTGCAAGGACGACGTGAGGTTTTACATGAGAGACTTGTTAACGAGAATGAAGATTGGCGACTCGAGTATGAAAAGGCTGGCTCTGATTAATCTGCACGAGGTTGTAATGGAAGATGAGAAGTATGTGAAGGTGATTGTGGAAGTGGGTGACGTTGTTCATGTTCTAGTGACTTTTCTTGATTCGCCGGAGATGGAAATCCGAGAAGAATCCGCCAAATTGCTGTCTGTGATTGCATGTTTCGATTCGTACAAAGGGGTTCTGATTGGAGCCGGCATTATCGCGCCACTGATTCGGGTTTTGGAATCCGGTGGCGAGTCCGGGAAAATGGGAGCTGCAAGGTGTTTGATGAAATTAACTGAGAATTCTGATAATGCTTGGTCTGTTTCTGCTCATGGCGGAGTCACTGCATTGTTAAAGATATGCGCTAATGAAGATTCTAGCGGAGAATTGGTTGGTCTTGCTTGTGGGGTGTTGAGAAATCTAGTTGGTGTCGAAGAAATAAAGAGATTTATGGTTGAAGAGGGTGCGATATCAACTTTCATTAAGCTGATGAGATCCAACGACGAAGCCATTGTAAATTCCATAGAGTTCATTCAAAACATTGCTTCTGGAGACGGAATGGTTAGACAAACGGTAATCAAAGAAGGCGGAATTCATGCTTTGTTAAGAGTCTTGGATCCTAAGTGGTCGTATTTCTCTAAGACCAGAGAGATCGCAATGAGAGCTATAGAAAACTTATGTTTTTCTTCACCTAGTTCTGTTACTATGTTGATGAATCATGGCTTTGTTGATCAACTGTTACACTACATTCGCAACGGTGAGGTTTCAATTCAAGAATTGGCTCTGAAAGTGGCACTCAGATTATGTTCAACATCAGAAGGAGCAAAGAAAGCAATGGTTGATGCAGGCTTTATGCCAGAGCTTGTTAAGTTTCTGAAGGCAAGGTCGTTTGAAGTTCGTGAAATGGCAGCAGAAGCACTCTCTGTAATGGTAATGGTACATAGAAACAGAAAGAAATTTGTGCAGAATGACCAAAGCATAGCCCTTCTTCTGCAATTGCTTGACCCAGAAGAGGGTAACACAGGTAATAAAAAGTTCTTGATTTCCATCTTAATGTCACTAACCAGTTGCAACTGTGGGCGAAAAAAGATTGTCAATTCAAATTATGCCAACAAGATAGAGAAATTTGCAGAAGCTGAGTTTTCTTCAGATGCTAAGAGACTCGTGAGGAAGCTATCCACTAACCGATTCCGCAGTATGCTGAGTGGAATTTGGCACTCGTGA 1713 0.4402 MGNEENSREPSTGGPSFRQAVELISSLISLSHSVRVFVGKWQLIRNKLEELHSGLIAAGNCDSGENPSLCGVVPAILVTANECHDLARRCVDLSYSGKLLMQSDLDAMFGKFDGHVRKLSEIYKAGILTHRYALIVSRPSVGACKDDVRFYMRDLLTRMKIGDSSMKRLALINLHEVVMEDEKYVKVIVEVGDVVHVLVTFLDSPEMEIREESAKLLSVIACFDSYKGVLIGAGIIAPLIRVLESGGESGKMGAARCLMKLTENSDNAWSVSAHGGVTALLKICANEDSSGELVGLACGVLRNLVGVEEIKRFMVEEGAISTFIKLMRSNDEAIVNSIEFIQNIASGDGMVRQTVIKEGGIHALLRVLDPKWSYFSKTREIAMRAIENLCFSSPSSVTMLMNHGFVDQLLHYIRNGEVSIQELALKVALRLCSTSEGAKKAMVDAGFMPELVKFLKARSFEVREMAAEALSVMVMVHRNRKKFVQNDQSIALLLQLLDPEEGNTGNKKFLISILMSLTSCNCGRKKIVNSNYANKIEKFAEAEFSSDAKRLVRKLSTNRFRSMLSGIWHS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0916 570 SMART arm_5 223 263 IPR000225 GO:0005515
Dere10g0916 570 SMART arm_5 307 346 IPR000225 GO:0005515
Dere10g0916 570 SMART arm_5 181 222 IPR000225 GO:0005515
Dere10g0916 570 SMART arm_5 348 391 IPR000225 GO:0005515
Dere10g0916 570 SMART arm_5 264 306 IPR000225 GO:0005515
Dere10g0916 570 SMART arm_5 434 475 IPR000225 GO:0005515
Dere10g0916 570 Gene3D - 152 290 IPR011989 -
Dere10g0916 570 Gene3D - 291 373 IPR011989 -
Dere10g0916 570 Pfam Armadillo/beta-catenin-like repeat 438 471 IPR000225 GO:0005515
Dere10g0916 570 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 275 319 IPR000225 GO:0005515
Dere10g0916 570 SUPERFAMILY ARM repeat 153 550 IPR016024 -
Dere10g0916 570 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 569 - -
Dere10g0916 570 Gene3D - 374 555 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0916 Dere-ChrDere10 17031173 17032885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0916 135 424 U-box Gene Family AT2G23140 26.280 2.41e-12 67.8