Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0909 ATGAACGACTTAATCTCAAGCTCCTTCAGAAAATATGCTGACGTGAACCAGCCATACCTGAATGATGTGGAGGCTGGGAAGGAAAGTGTAAATCTTGATAAGTTTTTCGAAGATGTCGAAAACGTAAAACAAGACATGAGGCAAGTTGAGATGTTATATAGAAAACTGCAGGAAGCCAATGAAGAAAGTAAGATCGTCCACAATGCGAAAACCATGAAAGAACTAAGAGCTCGAATGGATAAAGACGTTGAACAAGTCCTTAAACGCGTCAAAATCATCAAAGGCAAGCTCGAAGCTCTAGAACGTTCTAATGCAGCTCAGAGAAACGTCCCAGGTTGTGGTCCAGGTTCTTCTGCAGATCGAACCAGAACCTCAGTGGTGAGTGGCTTGGGGAAGAAGCTAAAGGATATGATGGATGATTTTCAAGGGTTAAGAGCGAGAATGCAAAGTGAGTATAAAGAAACGGTGGAACGAAGGTACTTCACCATCACAGGAGAGAAAGCAGACGATGAGACTATAGAGAACTTGATATCAAGTGGGGAAAGTGAGAGCTTTTTGCAGCGAGCAATCCAAGAACAAGGGAGGGGTCAAATAATGGATACCATATCAGAAATCCAAGAACGACATGACGCTGTGAAGGAGATAGAGAAGAACTTGATGGAGCTTCATCAGGTGTTTTTGGATATGGCTGCACTAGTGGAAGCTCAAGGACAACAGCTTAATAACATAGAAAGCCATGTGAAGTATGCTAGTTCATTTGTAAGACGAGGAACAGAGCAACTCGAGGAGGCTCGAGAGCACCAGAAGAGTGCTAGGAAATGGACGTGTATTGCTATTCTTCTTGGCATTATTCTCATCATTGTCATCTTGTTTCCTCTCATCACATCAATTTTTCCGATGTTAATGAGATAA 912 0.4232 MNDLISSSFRKYADVNQPYLNDVEAGKESVNLDKFFEDVENVKQDMRQVEMLYRKLQEANEESKIVHNAKTMKELRARMDKDVEQVLKRVKIIKGKLEALERSNAAQRNVPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQSEYKETVERRYFTITGEKADDETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLMELHQVFLDMAALVEAQGQQLNNIESHVKYASSFVRRGTEQLEEAREHQKSARKWTCIAILLGIILIIVILFPLITSIFPMLMR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0909 303 PANTHER SYNTAXIN 44 287 IPR045242 -
Dere10g0909 303 Gene3D - 193 296 - -
Dere10g0909 303 CDD SynN 32 189 IPR006011 GO:0016020
Dere10g0909 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Dere10g0909 303 SUPERFAMILY t-snare proteins 31 257 IPR010989 GO:0016020|GO:0016192
Dere10g0909 303 Gene3D - 32 159 - -
Dere10g0909 303 Coils Coil 83 103 - -
Dere10g0909 303 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere10g0909 303 CDD SNARE_syntaxin1-like 201 263 - -
Dere10g0909 303 SMART SynN_4 27 153 IPR006011 GO:0016020
Dere10g0909 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 29 159 - -
Dere10g0909 303 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Dere10g0909 303 Pfam SNARE domain 239 290 IPR000727 -
Dere10g0909 303 SMART tSNARE_6 197 264 IPR000727 -
Dere10g0909 303 FunFam Syntaxin 132 195 295 - -
Dere10g0909 303 Coils Coil 39 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0909 Dere-ChrDere10 16922891 16923802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0909 1 301 SNARE and Associated Proteins AT1G61290 75.828 4.27e-173 479