Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0890 ATGGCTTTTGAGCCGTTAGATTGGTATTGTCGGCCAGTGCCAAATGGAGTATGGACAAAAGTGGTTGAGAATGCCTTTGGTGCTTATACTCCTTGTGCAGTTGATTCTCTTGTGATCGTCATTTCGCATTTGGTACTTCTTGGCCTGTGCTTCTATCGAATATGGTTGATTAAAAAGGATTTCAAAGTCAAGAGATTCTGCTTAAGGTCAAAGCTTTATAATTATATTTTGGGGTTGTTAGCTGGATATTGCACTGCAGAGCCATTATTCAGATTGGTCATGCAACTATCGGTTTTAAACTTAGATGGACAGACTGGTCTTGCTCCATTTGAGATGGTTTCACTCATCACTGAGGCTCTTGCTTGGTGCTCTATGCTGGTTTTGATTGGCATTGAAACTAAAGTCTATATCTGCGAATTTCGATGGTTCGTTAGATTTGGCGTGATTTATACTTTAGTAGGGGATGCTGTTATGTTCAATCTCATATTTTCTGCAAAGGAGTTCTACAGTAGATTGGTGCTGTATTCATACACAAGTGAGGTTGCCTTACAGGTTTTGTTTGGAATACTTTTGCTTGTGTATGTTCCTAATTTGGATCCTTATCCTGGTTATGCTCCCATTCGAAGTGAAATGGTCACTGATATTGTATATGAAGAACTCCCTGGAGAAGAGCAGATATGTCCCGAAAGGCATGCCAATATATTTTCAAGAATTACTTTTTCATGGATGAATCCCATCATGAAGCTTGGATATGATAGACCACTTACTGAGAGAGATGTGTGGAAATTAGATACTTGGGATCGGACTGAGACATTGAATAACAAGTTCCAAAGATGTTGGAATGAGGAATCTCAAAAATCCAAACCGTGGCTTTTAAGAGCATTAAATAGTAGCCTTGGAGGAAGGTTTTGGTGGGGAGGCTTTTGGAAGATTGGCAATGATGTTTCCCAATTCTTCGGGCCTCTTATATTGAACCAGCTGCTACAGTCTATGCAAAGAGGTGATCCGGCATGGATTGGCTATGCTTATGCCCTCTCAATATTTGTTGGAGTGGTCTTCGGGGTGTTATGTGAAGCTCAGTATTTTCAGAACGTCATGCGTGTTGGTTACAGGCTTAGATCGACCCTGGTGGCAGCTGTTTTTCGTAAATCTTTAAGGCTTACTCATGAAGCTCGAAAGCAGTTTGCATCTGGGAAAATAACCAATTTGATGACTACAGACGCTGAGACACTTCAGCAAATATGCCAGTCACTTCACACTTTGTGGTCAGCTCCATTTCGTATCACCATTGCACTGGTTCTTCTTTACCAACAACTAGGTGTTGCTTCGCTTCTTGGTGCCTTGATGCTTGTTCTAATGTTCCCATTGCAGACTTTTATCATTAGTAGAATGCAGAAGTTTTCTAAGGAAGGGCTGCAGCGGACGGACAAGAGAATTAGTCTCATGAACGAAATTTTGGCTGCGATGGATACTGTGAAATGTTTTGCATGGGAGAGTAGTTTCCAATCTAAAGTACAAGGTGTCCGAGATGATGAATTATCATGGTTCCGGAAAGCATCATTACTTGGAGCGTGCAATGGATTCATACTAAACAGCATTCCAGTTTTCGTAACTGTTATTTCATTTGGAGTGTTCACCTTGCTTGGAGGGGATTTGACACCTGCAAGAGCTTTTACTTCACTTTCTTTGTTCGCTGTGCTGCGCTTTCCTCTCTTCATGCTTCCTAATATTATAACTCAGGTGGTTAATGCAAATGTATCCTTGAAGCGTCTGGAGGAGTTGCTTTTAGCAGAAGAAAGGATTCTTATGCTCAATCCGCCTCTAAAGCCGGGATTACCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATGCAAAGGCAGGGAGGCCTACATTATCTGACATCAATCTGGATGTACCAGTTGGTAGCCTAGTTGCAATTGTTGGCAGTACTGGAGAAGGGAAGACATCGCTCATATCTGCAATGCTTGGGGAGATTCCATCAATTGCTGATGCAACTGTTGTTATAAGAGGCACTGTTGCTTATGTACCACAAGTTTCGTGGATTTTTAACGCAACTGTACGAGATAACATTTTATTTGGTTCTCTCTTCAACCCTATTAGATATGAGAAGGCAATTGATGTGAGTGAACTGCAGCACGACCTTGAGTTACTGCCTGGTGGTGACCTTACTGAAATTGGTGAAAGAGGGGTAAATATCAGTGGTGGTCAAAAACAAAGGGTATCCATCGCTAGAGCTGTCTACTCCAATTCAGATGTGTACATCTTTGATGACCCTTTAAGTGCTCTGGATGCACATGTTGCCAGACAGGTTTTTGATAGATGCATCAAAGGAGAATTGAGAGGAAAGACCCGAGTCCTTGTTACAAATCAGCTGCATTTCCTTTCACAGGTTGATAAAATCATATTGGTCCACGAAGGTGTGGTGAAAGAACAGGGAACTTTTGAGGAACTCTCTAATGATGGACCTCTGTTTCAAAAGCTTATGGAAAATGCGGGAAAGATGGAGGAGTATCCAGAAGAAAATGTAGATAGTGAAACTAATGATCAGAAGTTGTCTTCTAAACCAATTGCTAATGGAACACCTAATGATATGGCAAGCATTGGAAATAAACCTAAAGAAGTCAAATCTGTTCTTATCAAGCAGGAGGAACGGGAAACAGGTGTTGTCAGTTGGAAAGTTCTACAGAGGTACAAGAATGCCTTAGGAGGATTCTGGGTGGTGCTAGTACTCTTTGCATGCTATATCTCAACAGAAGTGTTACGAGTTTCTAGTAGCACATGGTTAAGCCATTGGACTGATCAGAGTGCATCAGAGGGTTATAATCCTGGTTTCTACAATCTAATATATGCATCTCTGTCATTTTGTCAGGTTTTGGTGACTTTAATAAATTCTTATTGGCTAATCATATCAAGTCTTTATGCCGCCAGAAGGTTGCACGATGCCATGCTTCACTCCATTTTACAGGCTCCAATGGTTTTTTTCCATACCAATCCCCTTGGGAGGATTATCAATAGGTTTGCAAAGGATCTTGGTGATATAGACCGTAATGTTGCACCGTTTTTGAATATGTTTCTGGGCCAGGTTTCCCAGCTCCTTTCAACGTTCATCCTGATAGGGATTGTCAGTACAATGTCGTTATGGGCAATAATGCCATTACTGGTCTTGTTTTATGGAGCCTATCTATATTATCAGAGCACAGCCCGTGAAGTGAAGCGCTTAGATTCTATTAGCAGATCTCCTGTATATGCACAATTTGGAGAAGCACTTAATGGTCTATCAACTATCCGTGCTTACAAAGCTTATGACCGAATGGCTGACATTAATGGGAAATCCATGGACAACAATATACGCTTCACACTTGTCAACATGAGTGGTAATCGATGGCTTGGAATTCGTCTTGAAACTTTGGGTGGCCTTATGATATGGTTTACTGCATCCTTTGCCGTAATGCAGAATGGGAGGGCAGAGAACCAGCAGGCATTTGCTTCCACAATGGGGCTACTACTTAGTTATGCTTTAAATATTACTAGCTTGCTGACTGCTGTGCTCAGGCTTGCAAGTCTGGCTGAGAATAGTTTAAATGCAGTCGAGCGTGTTGGTACTTATATTGATTTGCCTTCAGAGGCTCCATCTGTCATAGAGAGTAATCGCCCTCCTCCTGGGTGGCCGTCATCTGGATCTATCAGATTTGAAGATGTTTTTCTTCGATATAGGCCTGAACTTCCTCCTGTCTTGCATGGGTTGTCTTTCAGAATTTTTCCCAGTGATAAGGTTGGCATTGTTGGTAGAACAGGGGCAGGAAAATCTAGCATGCTTAATGCTTTATTTCGACTTGTAGAATTGGAAAGAGGAAAAATCTTAATTGATGACTGTGATATTGCTAAATTTGGACTGACTGATTTACGTAAAGTTCTTGGAATTATACCACAATCACCTGTTCTCTTTTCAGGAACTGTGAGATTTAATCTCGATCCTTTCAATGAACACAATGATGCTGACCTTTGGGAGGCTCTGGAGAGAGCACATTTGAAGGATGTGATACGGAGGAACTCACTGGGGCTGGATGCTGAGGTATCTGAAGCAGGGGAGAACTTCAGTGTTGGACAGAGACAGCTATTGAGTCTCACTCGAGCATTATTGCGGAGATCAAAGATATTGGTACTTGATGAGGCAACTGCTGCAGTTGATGTTAGAACTGATGCACTTATACAGAAAACAATTCGAGAGGAGTTTAAATCCTGTACTATGCTAATTATTGCGCATCGACTTAACACCATCATTGACTGTGATCGCATCCTTCTGCTTGATGGTGGTCAGGTCCGTGAATATGGTACCCCTGAAGAGCTACTGTCAAATGAAGGTAGTGCTTTCTCAAAGATGGTACAAAGTACTGGAGCTGCAAATGCTCAATATTTACGCAGCTTAGTACTCGGTGGTGATGTTGGAAACAAGTCAGTGCAAGAGGAAAAGCAACTCGATGGACAGAGAAGATGGTTAGCTTCTTCTCGATGGGCTGCTGCAGCACAATTTGCCCTTGCCGTCAGCCTGACCTCCTCCCAGAATGACCTCCAACGGTTGGAAATTGAAGATGATGACAGTATTCTCAAGAAGACCAAGGATGCTGTGATAACTTTGCAGGGGATTTTAGATGGGAAGCATGATAAAGCAATTGAGGAATCTTTAGATCGATACCAGATATCCCCAAACAGTTGGTGGTCGGCCCTTTTCAAGATGATTGAAGGTCTTGCTATAATGAGCAGATTTGCCCGGAACAGGCTTCATCAGTCAGACTATAGTTTCGAAAACACATCAATAAATTTTGACCATGTTGACATGTAG 4866 0.419 MAFEPLDWYCRPVPNGVWTKVVENAFGAYTPCAVDSLVIVISHLVLLGLCFYRIWLIKKDFKVKRFCLRSKLYNYILGLLAGYCTAEPLFRLVMQLSVLNLDGQTGLAPFEMVSLITEALAWCSMLVLIGIETKVYICEFRWFVRFGVIYTLVGDAVMFNLIFSAKEFYSRLVLYSYTSEVALQVLFGILLLVYVPNLDPYPGYAPIRSEMVTDIVYEELPGEEQICPERHANIFSRITFSWMNPIMKLGYDRPLTERDVWKLDTWDRTETLNNKFQRCWNEESQKSKPWLLRALNSSLGGRFWWGGFWKIGNDVSQFFGPLILNQLLQSMQRGDPAWIGYAYALSIFVGVVFGVLCEAQYFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFASGKITNLMTTDAETLQQICQSLHTLWSAPFRITIALVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKFSKEGLQRTDKRISLMNEILAAMDTVKCFAWESSFQSKVQGVRDDELSWFRKASLLGACNGFILNSIPVFVTVISFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEELLLAEERILMLNPPLKPGLPAISIKNGYFSWDAKAGRPTLSDINLDVPVGSLVAIVGSTGEGKTSLISAMLGEIPSIADATVVIRGTVAYVPQVSWIFNATVRDNILFGSLFNPIRYEKAIDVSELQHDLELLPGGDLTEIGERGVNISGGQKQRVSIARAVYSNSDVYIFDDPLSALDAHVARQVFDRCIKGELRGKTRVLVTNQLHFLSQVDKIILVHEGVVKEQGTFEELSNDGPLFQKLMENAGKMEEYPEENVDSETNDQKLSSKPIANGTPNDMASIGNKPKEVKSVLIKQEERETGVVSWKVLQRYKNALGGFWVVLVLFACYISTEVLRVSSSTWLSHWTDQSASEGYNPGFYNLIYASLSFCQVLVTLINSYWLIISSLYAARRLHDAMLHSILQAPMVFFHTNPLGRIINRFAKDLGDIDRNVAPFLNMFLGQVSQLLSTFILIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFTLVNMSGNRWLGIRLETLGGLMIWFTASFAVMQNGRAENQQAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPSVIESNRPPPGWPSSGSIRFEDVFLRYRPELPPVLHGLSFRIFPSDKVGIVGRTGAGKSSMLNALFRLVELERGKILIDDCDIAKFGLTDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLTRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGQVREYGTPEELLSNEGSAFSKMVQSTGAANAQYLRSLVLGGDVGNKSVQEEKQLDGQRRWLASSRWAAAAQFALAVSLTSSQNDLQRLEIEDDDSILKKTKDAVITLQGILDGKHDKAIEESLDRYQISPNSWWSALFKMIEGLAIMSRFARNRLHQSDYSFENTSINFDHVDM 1621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0890 1621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere10g0890 1621 CDD ABC_6TM_ABCC_D2 916 1212 IPR044726 GO:0140359
Dere10g0890 1621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
Dere10g0890 1621 FunFam ABC transporter C family member 2 609 855 - -
Dere10g0890 1621 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Dere10g0890 1621 CDD ABCC_MRP_domain1 615 815 - -
Dere10g0890 1621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere10g0890 1621 SUPERFAMILY ABC transporter transmembrane region 913 1217 IPR036640 GO:0005524|GO:0016020
Dere10g0890 1621 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1477 - -
Dere10g0890 1621 Gene3D ABC transporter type 1, transmembrane domain 879 1218 IPR036640 GO:0005524|GO:0016020
Dere10g0890 1621 Gene3D ABC transporter type 1, transmembrane domain 273 601 IPR036640 GO:0005524|GO:0016020
Dere10g0890 1621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 838 IPR027417 -
Dere10g0890 1621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1468 IPR027417 -
Dere10g0890 1621 Gene3D - 609 864 IPR027417 -
Dere10g0890 1621 Pfam ABC transporter transmembrane region 307 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere10g0890 1621 Pfam ABC transporter transmembrane region 917 1175 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere10g0890 1621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Dere10g0890 1621 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Dere10g0890 1621 Gene3D - 1220 1473 IPR027417 -
Dere10g0890 1621 CDD ABC_6TM_ABCC_D1 305 590 IPR044746 GO:0140359
Dere10g0890 1621 FunFam ABC transporter C family member 2 279 600 - -
Dere10g0890 1621 SMART AAA_5 642 816 IPR003593 GO:0016887
Dere10g0890 1621 SMART AAA_5 1263 1456 IPR003593 GO:0016887
Dere10g0890 1621 MobiDBLite consensus disorder prediction 857 874 - -
Dere10g0890 1621 FunFam ABC transporter C family member 2 880 1218 - -
Dere10g0890 1621 SUPERFAMILY ABC transporter transmembrane region 289 598 IPR036640 GO:0005524|GO:0016020
Dere10g0890 1621 CDD ABCC_MRP_domain2 1235 1455 - -
Dere10g0890 1621 MobiDBLite consensus disorder prediction 845 874 - -
Dere10g0890 1621 FunFam Multidrug resistance-associated protein member 4 1221 1473 - -
Dere10g0890 1621 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0890 Dere-ChrDere10 16524396 16579555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0890 582 831 Calmodulin-binding Proteins AT2G36910 28.358 9.94e-23 104