Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0851 ATGGCTACTCCTAGTCCTACGCACCTCCCGGACCACTTCAAGTGTCCGATTTCGCTCGAAATTATGTCCGACCCGGTCATCCTCTCTTCGGGGCACACCTTCGATCGGGCTTCCATTCAACGGTGGCTCGACGCCGGCCACCGGACATGCCCAATTACCAAACTGCCCCTCCCTGATCACCCTTCCCTCATACCCAATCACGCTCTCAGAAGCTTGATTTCGAACTATTCTCTTCTCTCACCGTCGAAGGAGGCTGCTCCTCCGCAACCCGAAACCCTAATTTCCACTCTTACCTCTCGCTCGTCGTCTCTGGAGAGCCGAATAGAATCGCTGGACCAGCTCACGCGCCTTTCCAAGCGTGACTCGGTGTTCCGTCGGCGGTTGACTGAGTCAGGAGTGGTATCGGCGGTGCTGAACTGCGTTGACGCCGGCGACGCTACCCTTCAGGAGAAAGCTCTCTCGTTGTTGCTGAATCTTAGTCTCGACGACGATAACAAGGTGGGTCTGGTGGCGGAGGGTGCGATAGGTAGAGTTGTAGCAGTTCTGGTAGGTGGCTCACCGGATTGCCGAGCAGTGGCTGCAACCATGCTGACGAGTTTGGCGGTTGTGGAAGTGAACAAGGCCACGATTGGTGCGTATCCATGTGCAATAGGAGCCCTGGTTTCGCTTCTTCGAGATGGTGAAGGCAGAGAGAAGAAAGAAGCGGCCACAGCGCTCTATGCTATATGTTCTTTTCCTGATAATCGGAGGAGAGCCGTGGATTGTGGGGCGGTACCCATTTTGCTTAGAGCTGCTGATTCTGGGCTCGAAAGGGCTGTGGAAGTTCTTGGTGTCCTGGCTAAGTGTAAGGAAGGTAGGGAGCAAATGGGAAGATATCATGGATGTGTACAGATTCTAGTACGGGTGTTGTGGAATGGAAGCTCGAGGGGAGTTCAATATGCCCTGTTGGCACTGAATTCCCTTTGTTGTAATAGTGAAAAAATGGTTATAGAGGCCACGAAAGAAGGAGTTTTGGAGACATGTCTGGGGTTGCTGGATGATGATAATGAAAAAGTGAGGAGAAATTCCTCCAGTTTGATTCAGGTTCTGCGTGGAAACCATCGAATGAGTTAA 1113 0.5238 MATPSPTHLPDHFKCPISLEIMSDPVILSSGHTFDRASIQRWLDAGHRTCPITKLPLPDHPSLIPNHALRSLISNYSLLSPSKEAAPPQPETLISTLTSRSSSLESRIESLDQLTRLSKRDSVFRRRLTESGVVSAVLNCVDAGDATLQEKALSLLLNLSLDDDNKVGLVAEGAIGRVVAVLVGGSPDCRAVAATMLTSLAVVEVNKATIGAYPCAIGALVSLLRDGEGREKKEAATALYAICSFPDNRRRAVDCGAVPILLRAADSGLERAVEVLGVLAKCKEGREQMGRYHGCVQILVRVLWNGSSRGVQYALLALNSLCCNSEKMVIEATKEGVLETCLGLLDDDNEKVRRNSSSLIQVLRGNHRMS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0851 370 SUPERFAMILY RING/U-box 7 76 - -
Dere10g0851 370 PANTHER U BOX DOMAIN-CONTAINING 10 361 - -
Dere10g0851 370 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Dere10g0851 370 CDD RING-Ubox_PUB 10 59 IPR045210 -
Dere10g0851 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 79 IPR013083 -
Dere10g0851 370 SMART Ubox_2 12 76 IPR003613 GO:0004842|GO:0016567
Dere10g0851 370 SMART arm_5 121 161 IPR000225 GO:0005515
Dere10g0851 370 SMART arm_5 282 323 IPR000225 GO:0005515
Dere10g0851 370 SMART arm_5 245 281 IPR000225 GO:0005515
Dere10g0851 370 SMART arm_5 162 202 IPR000225 GO:0005515
Dere10g0851 370 SMART arm_5 324 365 IPR000225 GO:0005515
Dere10g0851 370 Gene3D - 89 267 IPR011989 -
Dere10g0851 370 Gene3D - 268 368 IPR011989 -
Dere10g0851 370 ProSiteProfiles U-box domain profile. 8 83 IPR003613 GO:0004842|GO:0016567
Dere10g0851 370 FunFam RING-type E3 ubiquitin transferase 89 365 - -
Dere10g0851 370 Pfam U-box domain 10 76 IPR003613 GO:0004842|GO:0016567
Dere10g0851 370 SUPERFAMILY ARM repeat 92 363 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0851 Dere-ChrDere10 15742051 15743163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0851 9 365 U-box Gene Family AT4G21350 64.110 3.73e-161 454