Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0836 ATGGCGTCGTCCCAAGTTGAATTTGCTTCATCAACCTCACCGTTTGGCTGCATGAACACAAGCAAACGTAATCATCGAGAGAGATATAGCAGAGAAAGCAATATTAATGCTCGTGCCACACAAGCAGCATTCAGCCATTTCGTCAGAGACCACCTTAACAACAACAAAGACGACAACAATTCCTGTTCTTGGGTCCCAAACAACAAGGCGACGAGCAACCTTAAAAAGCTACATTTTACGACCAACAAAGGAGACCAAGATGAGTCGTCGTCATCATCATCGTCATCGTCTCCATCATCAAAACCATCTTCTAGTTCTGTATCCTCAAATCTGGGGGCTTCTTCACTCGTTCAGATATGGGAAAAGAGACTCACGCAATCCGACATACAAGGCAAGGCAACTCCGAGGTCTAGCCCTAATGCAAGTTCTGCTTCACCTCAAGGTTCGTCACCAGAAGAAGCTGATTGTGAGAGCGAGAGTGAAAGCTCACCACAAGCGCAGAACCAGAATGAGATTAATGGTATTGTAGAGAGGGAGAGAGTAAGGGTTGTGGATATTATAAAGAGACTAACGGCTACGAGTGATCCGGAGATGGTGGATCAAGTTCAAGAGCAGTGTTGCGTTGGAATGGGATCGCAGTGGACGCATGAACAATCAGAAAACCGAGGTTTTGGTCAGGGTATAGTGGTAAATTCCTCGCCTCGAATCAGAGGACGCCAAGCCTTCAATGACTTGCTTATGCAGATGGAGCGTGATCGCCACGCGGAGCTCCATAATCTAGTGGAGCGTGCAGCTGTATCCAAGTTTGCACACAGAGGTCGGATTCAGTCAATGCTTCGACTTAGACTAATGCAACGTAGTGCAGCAGCTAATGATCAATGCCGCTCGCAAGTGATAAGACAGCCACACGGATCAGCAATTATGCGCTTAAGGCAAAGATTTAGCACAGGGGTTGAAAATGGAACTTCAGTTCAGCCAGAAGTGGTAAACAATAATGTCACAGTACAAAACACAGTGTCTCCTACTAGTGCAGATCAGAACAAAGAAGAGACTCCTCGAAGTTCAGATGTCACAGTAATAAGCTCTGAGGCTCAGAATGTTAACCTGCAAGACAATAATGTGGAGGCAAGTTCTTCCTCCATGGCTGATCTGAATGCAAAAGAGATAGCAGAAAAGGTGGAGGGATGTGAGGAGAAGCATGACGCCATTGCTGATCAAACCAGTTATGATGAGATTGAAGAGGAAGAAGAGGGCAATCATGATGAGATAGTAGAGGAAGAGACCAGTGAGCAGCATTATGATGAAGCTAGACTTGACTGGATCAGTCAAATTTCTAGACCAAAGAGCTATTGGGAAGATCGCAGGCAAGCATGGTACAAGGAGATGCTTGACACTGAATCAAAAAATGAGGATATACGCCAACTCATTCAATGTAGAACGGTGTCAAATTTCCTGTCTAGTGAGCTCGGGGAAAGAATGGATAGATTGATGGAGTCTCATAAGCGAACACAAGCAAATCTTTTGGGTAGTCAAGAAGATCAAGACGATGACAGCAGAGGGAGAATGGAGCAGTTGGTAGCATTCTTACAACAACGCATGCATTCTGCAAAAAGGGATCATGAGGAAGAGATTGAGGATGAAGAAGAAGAAGAAGAGAAACAAGAGGAGGAAGGACAGGAGAATCTGATAAGTGGCTCATATAATGAGGAGAGTAACAGTAATAACCAATGTTTATCTCGGTCTTTCTGTCAGGATAGTCGCCAATACTCTTCATCCGCAAATCATCAGTCTATGCTCGTATATGATTTGAGAGGGCATATGGAGCAACTCTATCATGAAATGTCTGAGTTAAGGAAATCAATAAAGAGCTGCATAGACATGCAAATGGTATTACAAAAGTCAATGAATCGAGAGACTCGTACAGATAAAGGAGGAGTGAAGTTCCATGATAGAGCACTGAAGAAAGGAAAATGTTGTATTTGCTATGTGATGAAAGCTGATTCACTTTTCTACAGATGTGGCCATATGTGTGCCTGTCTAAAATGTGCCACTGAAATGCAATGGAACAATGGGATATGTCCAATCTGCCAGGCTCCAATAGTAGATGTTGTACCAGTGTATATATGTTGA 2130 0.4385 MASSQVEFASSTSPFGCMNTSKRNHRERYSRESNINARATQAAFSHFVRDHLNNNKDDNNSCSWVPNNKATSNLKKLHFTTNKGDQDESSSSSSSSSPSSKPSSSSVSSNLGASSLVQIWEKRLTQSDIQGKATPRSSPNASSASPQGSSPEEADCESESESSPQAQNQNEINGIVERERVRVVDIIKRLTATSDPEMVDQVQEQCCVGMGSQWTHEQSENRGFGQGIVVNSSPRIRGRQAFNDLLMQMERDRHAELHNLVERAAVSKFAHRGRIQSMLRLRLMQRSAAANDQCRSQVIRQPHGSAIMRLRQRFSTGVENGTSVQPEVVNNNVTVQNTVSPTSADQNKEETPRSSDVTVISSEAQNVNLQDNNVEASSSSMADLNAKEIAEKVEGCEEKHDAIADQTSYDEIEEEEEGNHDEIVEEETSEQHYDEARLDWISQISRPKSYWEDRRQAWYKEMLDTESKNEDIRQLIQCRTVSNFLSSELGERMDRLMESHKRTQANLLGSQEDQDDDSRGRMEQLVAFLQQRMHSAKRDHEEEIEDEEEEEEKQEEEGQENLISGSYNEESNSNNQCLSRSFCQDSRQYSSSANHQSMLVYDLRGHMEQLYHEMSELRKSIKSCIDMQMVLQKSMNRETRTDKGGVKFHDRALKKGKCCICYVMKADSLFYRCGHMCACLKCATEMQWNNGICPICQAPIVDVVPVYIC 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0836 709 MobiDBLite consensus disorder prediction 532 573 - -
Dere10g0836 709 CDD mRING-HC-C3HC5_NEU1 655 707 - -
Dere10g0836 709 MobiDBLite consensus disorder prediction 128 153 - -
Dere10g0836 709 MobiDBLite consensus disorder prediction 1 20 - -
Dere10g0836 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 709 IPR013083 -
Dere10g0836 709 MobiDBLite consensus disorder prediction 542 557 - -
Dere10g0836 709 PANTHER BNAC05G24000D PROTEIN 345 708 - -
Dere10g0836 709 Pfam Zinc finger, C3HC4 type (RING finger) 655 702 - -
Dere10g0836 709 SUPERFAMILY RING/U-box 657 703 - -
Dere10g0836 709 Coils Coil 526 561 - -
Dere10g0836 709 MobiDBLite consensus disorder prediction 128 174 - -
Dere10g0836 709 MobiDBLite consensus disorder prediction 160 174 - -
Dere10g0836 709 MobiDBLite consensus disorder prediction 410 434 - -
Dere10g0836 709 ProSiteProfiles Zinc finger RING-type profile. 658 697 IPR001841 -
Dere10g0836 709 MobiDBLite consensus disorder prediction 81 110 - -
Dere10g0836 709 MobiDBLite consensus disorder prediction 410 424 - -
Dere10g0836 709 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0836 Dere-ChrDere10 15405648 15412631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0836 658 707 C3H Transcription Factor Family AT4G22250 36.000 6.72e-06 45.8