Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0810 ATGGCTTCTTCTAGCTCTGAGGATTCTATAAAAAGCAAAGTGAAGAAGCCAAACCAAGCAAGCACAAATATGCCTCTCTGCAAGGGAGCTTGGACTCCTGAAGAAGATAGGAGACTTGCTGAAGCCATTGCTGTTCACGGCGCAACAAGGTGGAACTCCATTGCAGCCAAAGCAGAGCTCAATAGGAGTGGTAAGAGTTGCAGGCTAAGATGGTTGAACTATCTCAGACCCAACATCAAGAGGGGAAACATATCAGACCAAGAAGAGGATTTGATACTTCGCCTTCATAAACTCCTTGGAAACAGGTGGTCATTGATAGCTGGAAGACTACCAGGTCGTACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGTGCAAGAAAATAAAGCAAAGTGAGAAGAAGAAAAGTGGGTGTTCAACAAGAGAAGATCTGAAACACATTGCTAAAGAGGCAGATTCAGTTCTTGAAGATAAATCAAATGTACTGGGAGGTGAAGAAGACTCATCGAAGCTCAGTTCTGATGTGGATGGGTTCTTCGATTTCTCCGATGAAGGACCTTTGAATCTGGAGTGGGTTAGCAAATTCCTTGAATTGAACTAG 606 0.4274 MASSSSEDSIKSKVKKPNQASTNMPLCKGAWTPEEDRRLAEAIAVHGATRWNSIAAKAELNRSGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKIKQSEKKKSGCSTREDLKHIAKEADSVLEDKSNVLGGEEDSSKLSSDVDGFFDFSDEGPLNLEWVSKFLELN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0810 201 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Dere10g0810 201 MobiDBLite consensus disorder prediction 1 29 - -
Dere10g0810 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Dere10g0810 201 Gene3D - 27 80 - -
Dere10g0810 201 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Dere10g0810 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Dere10g0810 201 FunFam Myb transcription factor 28 80 - -
Dere10g0810 201 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 23 152 - -
Dere10g0810 201 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Dere10g0810 201 CDD SANT 30 75 IPR001005 -
Dere10g0810 201 Gene3D - 83 156 - -
Dere10g0810 201 CDD SANT 85 126 IPR001005 -
Dere10g0810 201 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Dere10g0810 201 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Dere10g0810 201 SMART sant 27 77 IPR001005 -
Dere10g0810 201 SMART sant 80 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0810 Dere-ChrDere10 14575747 14577745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0810 28 140 MYB Transcription Factor Family AT5G40330 62.931 2.25e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere10g0810 Myb_DNA-binding 4.8e-18 CL0123