Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0806 ATGGAGGTTTCAACCATCAGAGGGTTACCTGAACTGGGAACAATAGAGGATCCTACTTTCTTCCATCAATGGCACCTAAACACTTTCGACGATCCTACCTTAGTACCCATAGCTGCTGCTTTTGGAGAGACCTTATTACAGCAACATTCATTCTCTAATAACCCAAACTTCAACCCCAAAATTAGTTGCATGCAAACTTCTTCATTGGCTGCGTTTGAAAGACCCACAAAGCAGATCAAAACCAGCAACACTTGCTGGAGTCCCAATAATGAGAGTGACCAGACATCATCAGACCTGCAATTTGCTTCTTGTCCAAGTCTTCTTTCCTTTGTAAACCCAAATTACATAAATCAAATGGGGTTTGTGAAGACCAAGCAGGAGACTGTGTCACCAAATATCAATCGCACCAATAATAATATCGATGTTTCTGACGTTTTGATATCTCAAGAATCCTTGGCAGCCCAAAACTATGGCTTCAAGGCAAGCCAAGACCAGGCCAAGAAGTTTGGGACAAGTCCTAATAAAGTTTCACAACCACAGGACCACATTATAGCTGAAAGGAAGCGAAGAGAGAAGCTCAGTCAGAGGTTCATTGCTCTGTCGGCCCTTGTTCCTGGCCTTAAGAAGATGGACAAAGCTTCTGTTCTTGGGGATGCTATAAAGTACATGAAGCAACTGCAAGAGAAAGTGTGGACTCTTGAAGAACAGTCTAAGGCCAAAACTGTGGAATCTGTGGTGATAGTGAAGAAATCTCAACTCGTTCTTGATGCTGAAGCTGCAGACTCTACTTCCTCAGATTCTGGTGGCTCCTTTGACGAGCGATTCCCTGAAATTGAAGCTAGATTTTGTGAGAGGAACGTGCTCATAAGAATTCACTGTGAGAAAAGTAAAGGAGTTTTGGAAAAAGCAATGGGTGTGATTGAGAATCTCCATTTAACAGTCACCAATAGTAGTGCCATGACCTTTGGGAGTTCTGCTCTTGATATAACAATTATTGCTCAGATGAATGCAGAATTTTGCATGACACTGGAGGATCTTGTCAGAAACCTACGCTCGGCTTTTAAATCTTTCATGTGA 1077 0.4234 MEVSTIRGLPELGTIEDPTFFHQWHLNTFDDPTLVPIAAAFGETLLQQHSFSNNPNFNPKISCMQTSSLAAFERPTKQIKTSNTCWSPNNESDQTSSDLQFASCPSLLSFVNPNYINQMGFVKTKQETVSPNINRTNNNIDVSDVLISQESLAAQNYGFKASQDQAKKFGTSPNKVSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYMKQLQEKVWTLEEQSKAKTVESVVIVKKSQLVLDAEAADSTSSDSGGSFDERFPEIEARFCERNVLIRIHCEKSKGVLEKAMGVIENLHLTVTNSSAMTFGSSALDITIIAQMNAEFCMTLEDLVRNLRSAFKSFM 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0806 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Dere10g0806 358 PANTHER BHLH TRANSCRIPTION FACTOR 43 355 - -
Dere10g0806 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 240 IPR036638 GO:0046983
Dere10g0806 358 SMART finulus 183 232 IPR011598 GO:0046983
Dere10g0806 358 Pfam Helix-loop-helix DNA-binding domain 180 227 IPR011598 GO:0046983
Dere10g0806 358 CDD bHLH_AtNAI1_like 180 251 - -
Dere10g0806 358 Coils Coil 223 243 - -
Dere10g0806 358 Gene3D - 172 241 IPR036638 GO:0046983
Dere10g0806 358 FunFam Basic helix-loop-helix family protein 174 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0806 Dere-ChrDere10 14501337 14504604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0806 177 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 60.440 1.58e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere10g0806 HLH 2.5e-10 No_clan