Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0779 ATGGGGAGAGGAAAGATTGCGATTAGAAGGATAGACAATTCGACAAGCAGGCAAGTGACTTTCTCTAAGAGAAGAAGTGGATTGATGAAGAAAGCAAGAGAGCTTTCGATCCTTTGTGACGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAAGCTCTATGACTTTGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTACAACAAACTAAAAGAGGAGCATCATCAGCTTATGAATCCTGCTTCGGAAGTCAAGTTTTGGCAGAGAGAAGCAACAATCTTGAGGCAACAACTGCAATACTTGCAAGAATGCCACAGGCAATTGATGGGTGAACAACTCTCTGGATTGGGCATTAAAGAACTACAGAATCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTACGGGTTAAAAAGGATCAAATTTTAACTGACGAGATTAGAGAGCTACAGCAAAAGGGAAATCAAATTCATCAAGAAAATGTAGAACTCTATAAAAGGATAGATCTAATCCATAAAGAAAATGCAGAATTAAAGAAGATATATGAAGCAAGGAATACGCATGAGCAAAATAAGAATTCCAATCCTCCATACACCATCAGCAACAGACATGATCCACATGCACCAGTCCGTCTCCAGCTGAGCCAGCCACAGCCTCAATATCATATTGAACCAGCAGCCAATGCAATGAAACTAGGGTATCCACTGAAACTGATGATATAA 729 0.4074 MGRGKIAIRRIDNSTSRQVTFSKRRSGLMKKARELSILCDAEVGLIVFSSTGKLYDFASTSMKSVIERYNKLKEEHHQLMNPASEVKFWQREATILRQQLQYLQECHRQLMGEQLSGLGIKELQNLENQLEMSLKGVRVKKDQILTDEIRELQQKGNQIHQENVELYKRIDLIHKENAELKKIYEARNTHEQNKNSNPPYTISNRHDPHAPVRLQLSQPQPQYHIEPAANAMKLGYPLKLMI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0779 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere10g0779 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere10g0779 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere10g0779 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere10g0779 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere10g0779 242 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g0779 242 MobiDBLite consensus disorder prediction 187 207 - -
Dere10g0779 242 Coils Coil 120 140 - -
Dere10g0779 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Dere10g0779 242 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Dere10g0779 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Dere10g0779 242 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Dere10g0779 242 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g0779 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere10g0779 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere10g0779 242 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0779 Dere-ChrDere10 14113719 14140191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0779 1 240 MADS-box Gene Family AT2G14210 62.810 5.26e-94 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere10g0779 K-box 6.4e-27 No_clan