Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0736 ATGGGTACGATGAATCCTCAGCCATTGCAAGCTCGGCCTTACGAGGGTGGAGAACAAGTGATGCAGGTTCCCATGCAGGTGGACGGTGTCGAAGAACGATTGAATGCTCAATGTGTTAATGGACGTCGTGACGAGGTCAGTGATAGGGTGGAAGAAGCTCTAGTGAGTTCCGGGTTAACTGGGACTAATGGCTGTGCTTTGCAGCCTCGAACCAGTGAGCTCACCGTTTCGTTTGAAGGCGAGGTCTATGTTTTTCCAGCGGTTACCCCAGAAAAGGTTCAGGCTGTATTATTATTGTTGGGAGGGCGTGAGATACCCAGTCCCAGTAACATCCCTGGAACTGAGTTCGTGGTGCAACAGAACTATCAGGACATGAAGGGAATTAATGATACTTCCCGAGGTTCAAAGCTTTCACGGAGATTTGCTTCCCTTGTTAGGTTTCGTGAAAAGCGGAAAGAGAGATGTTTTGAGAAGAAAATTCGGTACAACTGCCGTAAAGAAGTTGCACAGAGGATGCATCGTAAGAATGGACAGTTTGCATCGTCGAAGGAATGCTACAGTTCTGCTACGGAAAACTGGGACTCAAGCAATGGCACACCTTGCTCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTGGTGAAAAATCTACTCCAGCCATGCGTCGAGGACCAGCTGGTCCCAGATCTCTCTGCAATGCTTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAACAGGGAAGGTCAATTCTTTTGACCAAAATGAACTGGATACTTCAGCTGAGATGAAGCCTTCAACGATGAAACCAGAAAATTATTGTCCTGACCAGAATGAGGAAGGAAGCCCAGAGGAGACCAAGCCTGAGCCATTAGAGTCCAGACACTCACCCCAGAGGACAAATGAGCAGATCATAATTGTTAAGAGCAATGTGCTCAACTTCTCTAGAGCTAGTACCCCTCGATATAAGCACGAAACTGCCGAAGCTGTTACTGACAACTTGTCCATCCAAGTGGAGAATCTTGCTGTTAATCTGCATGGGCAGGATACTCTTGAAGATCTTGCTGATGCATCTGGAACAGATTTTGAGATTCCTACAGGTTTTGATGAGCAGGTTGAGATTGATGATTCCAACATGAAGACTTACTGGTTATGA 1173 0.4655 MGTMNPQPLQARPYEGGEQVMQVPMQVDGVEERLNAQCVNGRRDEVSDRVEEALVSSGLTGTNGCALQPRTSELTVSFEGEVYVFPAVTPEKVQAVLLLLGGREIPSPSNIPGTEFVVQQNYQDMKGINDTSRGSKLSRRFASLVRFREKRKERCFEKKIRYNCRKEVAQRMHRKNGQFASSKECYSSATENWDSSNGTPCSESTERRCQHCGIGEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKTGKVNSFDQNELDTSAEMKPSTMKPENYCPDQNEEGSPEETKPEPLESRHSPQRTNEQIIIVKSNVLNFSRASTPRYKHETAEAVTDNLSIQVENLAVNLHGQDTLEDLADASGTDFEIPTGFDEQVEIDDSNMKTYWL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0736 390 PANTHER GATA TRANSCRIPTION FACTOR 28 4 369 IPR045280 GO:0006355
Dere10g0736 390 MobiDBLite consensus disorder prediction 286 302 - -
Dere10g0736 390 CDD ZnF_GATA 208 251 IPR000679 GO:0006355|GO:0043565
Dere10g0736 390 Gene3D - 201 261 IPR013088 GO:0006355|GO:0008270
Dere10g0736 390 MobiDBLite consensus disorder prediction 257 307 - -
Dere10g0736 390 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Dere10g0736 390 Pfam GATA zinc finger 209 245 IPR000679 GO:0006355|GO:0043565
Dere10g0736 390 ProSiteProfiles Tify domain profile. 67 102 IPR010399 -
Dere10g0736 390 ProSitePatterns GATA-type zinc finger domain. 209 236 IPR000679 GO:0006355|GO:0043565
Dere10g0736 390 SMART GATA_3 203 256 IPR000679 GO:0006355|GO:0043565
Dere10g0736 390 MobiDBLite consensus disorder prediction 257 272 - -
Dere10g0736 390 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 258 - -
Dere10g0736 390 Pfam CCT motif 140 182 IPR010402 GO:0005515
Dere10g0736 390 SMART tify_2 67 102 IPR010399 -
Dere10g0736 390 Pfam tify domain 69 101 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0736 Dere-ChrDere10 12976244 12982756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0736 73 252 Tify Gene Family AT1G51600 58.511 2.71e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere10g0736 CCT 4.4e-14 CL0281