Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0715 ATGGTGAGAAGGAAGATAGCGATCAAGAAGATCGAGAACGTAGCTGCGAGGCAGGTGACTTTTTCGAAGAGGAAGAGAGGTTTATTCAAGAAGGCTATGGAACTGTCAACTCTTTGTGATGCTGAGGTTGCTCTCATTGTATTTTCTTCTACTAGCAAGCTCTTTGATTACGCTAGTACAAGCATGAGGCAAGTAATTGAAAGGCGAACCTGGTACTCAGAGGTGAACCTTGGCAAATCACTCCAGCCATCTGTTGAGACGCAGGTAGAAGGTGAATATTTTATGCTAGACAAGGAACTAAGAGAGAAGACTCATGAATTGAGGCAGCTCAATGGAGAAGAACTACAAGGATTGACCATAAAAGAACTACAGAAGCTAGAAGATCTACTTCAAACATGCTTGCGTCGTGTTTCAAAAGCAAAGGTTGAAAGAATCCAGCAGGAGATCAGTATTCTTGAGAAAAAGGAAGCCCTACTCATGGAAGAAAACCAGAGACTAAATCAGGAAGTCAAATCCATGGAAGAAAACCAGAGATTAAAACAGGTTCAGAGGCTTGAGCATGACCAAGACCACTCATTGGACACCTCTCTCAGAATGAGGTTATTCTTTCCTGAATCAAATTAA 624 0.4183 MVRRKIAIKKIENVAARQVTFSKRKRGLFKKAMELSTLCDAEVALIVFSSTSKLFDYASTSMRQVIERRTWYSEVNLGKSLQPSVETQVEGEYFMLDKELREKTHELRQLNGEELQGLTIKELQKLEDLLQTCLRRVSKAKVERIQQEISILEKKEALLMEENQRLNQEVKSMEENQRLKQVQRLEHDQDHSLDTSLRMRLFFPESN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0715 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere10g0715 207 CDD MADS_MEF2_like 3 68 IPR033896 GO:0000977|GO:0045944
Dere10g0715 207 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g0715 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere10g0715 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Dere10g0715 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere10g0715 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere10g0715 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere10g0715 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere10g0715 207 FunFam Transcription factor, MADS-box 13 84 - -
Dere10g0715 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere10g0715 207 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g0715 207 Coils Coil 123 183 - -
Dere10g0715 207 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Dere10g0715 207 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0715 Dere-ChrDere10 12323935 12360104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0715 1 179 MADS-box Gene Family AT2G22540 56.044 1.22e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere10g0715 K-box 3.9e-13 No_clan