Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0714 ATGTACCGATTCGTTTCGTTATATGTTTGTACAAAAATGGTTTTGTCAAAGTGGATAAGAGATGCCATTTACAGTCTGAGAGAAACAAGAGAGAAGGCTAAAATATTCATCATTCTCCCAAATCTACCATTTCTAGCAGAGAGAAAGAAAATGACGAGAAGGAAGATACAGATAAAGAAAATAGACAGCGTAACTGCGAGGCAGGTGACATTCTCGAAGAGGAGGAAAGGTCTTTTCAAGAAGGCACATGAGCTTTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTCTTCTCTGCAACTGGCAAGCTCTTTGATTATGCTAGCTCAAGTATTCAGCAGGTGATTGAAAGGTATGATCAGCATACAGCCATTCAAAGACTAGGCCAATCACCTGTTGATCTGAAGCTTGAAGGTGATTCTAACAAGCTGCCCAAGATAGTAGCAGAAAAGACTCGTGAATTGAGGCAGTTGAATGGGGAAGAGCTTCAAGGATGTACACTAGAAGAATTGCAGAAACTAGAGGAAAAACTTGAAAGAAGCTTGATCCGTGTTTCAAAAACAAAGGATGAAAGAGTTATGAAACATATAAGCACACTTAAGAAAAAGGGAGTCCAACTCTTGGAGGAGAATCGAAAAATGAAGCAGGCACTGAACCTTGAACATGAACAAAGGCAGTCTTCAGAATCCATCGTTGTTTGCGGTTCATCTGATCCTCCTCCTCAAGATTGTGATAGTTCTGACACATCTCTTAGGCTGGGGTTGTCTTTATTTAAATGA 780 0.4026 MYRFVSLYVCTKMVLSKWIRDAIYSLRETREKAKIFIILPNLPFLAERKKMTRRKIQIKKIDSVTARQVTFSKRRKGLFKKAHELSTLCDAEIALLVFSATGKLFDYASSSIQQVIERYDQHTAIQRLGQSPVDLKLEGDSNKLPKIVAEKTRELRQLNGEELQGCTLEELQKLEEKLERSLIRVSKTKDERVMKHISTLKKKGVQLLEENRKMKQALNLEHEQRQSSESIVVCGSSDPPPQDCDSSDTSLRLGLSLFK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0714 259 Gene3D - 64 134 IPR036879 GO:0003677|GO:0046983
Dere10g0714 259 SMART madsneu2 51 110 IPR002100 GO:0003677|GO:0046983
Dere10g0714 259 ProSitePatterns MADS-box domain signature. 53 107 IPR002100 GO:0003677|GO:0046983
Dere10g0714 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 60 107 IPR002100 GO:0003677|GO:0046983
Dere10g0714 259 ProSiteProfiles K-box domain profile. 134 226 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g0714 259 Coils Coil 168 191 - -
Dere10g0714 259 CDD MADS_MEF2_like 53 124 IPR033896 GO:0000977|GO:0045944
Dere10g0714 259 Pfam K-box region 138 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g0714 259 PRINTS MADS domain signature 88 109 IPR002100 GO:0003677|GO:0046983
Dere10g0714 259 PRINTS MADS domain signature 73 88 IPR002100 GO:0003677|GO:0046983
Dere10g0714 259 PRINTS MADS domain signature 53 73 IPR002100 GO:0003677|GO:0046983
Dere10g0714 259 FunFam Transcription factor, MADS-box 63 132 - -
Dere10g0714 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 53 216 - -
Dere10g0714 259 MobiDBLite consensus disorder prediction 229 249 - -
Dere10g0714 259 ProSiteProfiles MADS-box domain profile. 51 111 IPR002100 GO:0003677|GO:0046983
Dere10g0714 259 SUPERFAMILY SRF-like 52 127 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0714 Dere-ChrDere10 12310259 12318534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0714 51 255 MADS-box Gene Family AT2G22540 47.881 2.68e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere10g0714 K-box 3.1e-15 No_clan