Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0713 ATGAAGCGAAGCATTAAAGAGGCGTGGAGCTTTTGTACGGTAAAGCAAACACGGCCACAGAATAGGACTCTCTCACTCCCTCACTCTCTGCCCAGTGGTCCTCCTACGCTATGTTCCCATTTATCTTCATCACTCTGTCTTCATTCAACTGCTTCCTTTCCAGCCAGGTTTGGTGTTTCAATAGTCTGGATTTTTCAGCCTATTCTGATTGGAACCCATCTTTGTTCTTCAAGCAAGGAAATGACAAGACAGAAAATAGAAATAAAGAAGATCGATAACATAACGGCGAGACAGGTGACATTTTCAAAGAGGAGAAGAGGGCTTTTCAAGAAGGCTCAAGAGCTTTCAACTCTGTGTGATGCTGAGATTGCCCTCATCGTCTTTTCTGCTACTGGCAAGCTCTTTGAATATGCTAGCTCAAGTGTGCACCAGGTTATTGAAAGGTATGATCTGCACTCAGACATTGAAAGATTAGCCTATCCATCTATTGAGAATCAGAGTGATCACTTCAGCATGCTCCGCAAGGAAGAAGCCAATAAGATTCGGGAACTGAGGCAGTTGAAGGGGGAAGAACTTGAAGGATTGAACACAAAAGAATTACAGAAGCTAGAGGAACAATTAGAAACAGGTTTAAGCCGTGTTATCAAAGCCAAGGATAAAGTGATCTTGGAAGAGATTAATGTGCTCAAGAGAAAGGGAATGGAGCTGATGGAAGAGAACCAGAGATTGAAACAGGTGAAGAGCCTTGCAAATGAACAAGGACAGTCATCTGAGTCAGTCAATATTGGCAGCACATCAGATCCTCCTCAGGACTATGATAGTTCAGACACCTCTCTGAGATTGGGGTTGTCTTTGTTTAAGTAA 864 0.4294 MKRSIKEAWSFCTVKQTRPQNRTLSLPHSLPSGPPTLCSHLSSSLCLHSTASFPARFGVSIVWIFQPILIGTHLCSSSKEMTRQKIEIKKIDNITARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLFEYASSSVHQVIERYDLHSDIERLAYPSIENQSDHFSMLRKEEANKIRELRQLKGEELEGLNTKELQKLEEQLETGLSRVIKAKDKVILEEINVLKRKGMELMEENQRLKQVKSLANEQGQSSESVNIGSTSDPPQDYDSSDTSLRLGLSLFK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0713 287 SUPERFAMILY SRF-like 81 157 IPR036879 GO:0003677|GO:0046983
Dere10g0713 287 Coils Coil 226 246 - -
Dere10g0713 287 ProSiteProfiles MADS-box domain profile. 81 141 IPR002100 GO:0003677|GO:0046983
Dere10g0713 287 PANTHER SERUM RESPONSE FACTOR HOMOLOG 83 247 - -
Dere10g0713 287 MobiDBLite consensus disorder prediction 246 287 - -
Dere10g0713 287 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 90 137 IPR002100 GO:0003677|GO:0046983
Dere10g0713 287 FunFam Transcription factor, MADS-box 93 162 - -
Dere10g0713 287 Coils Coil 200 220 - -
Dere10g0713 287 MobiDBLite consensus disorder prediction 246 281 - -
Dere10g0713 287 SMART madsneu2 81 140 IPR002100 GO:0003677|GO:0046983
Dere10g0713 287 ProSiteProfiles K-box domain profile. 163 254 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g0713 287 Pfam K-box region 166 245 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g0713 287 CDD MADS_MEF2_like 83 154 IPR033896 GO:0000977|GO:0045944
Dere10g0713 287 ProSitePatterns MADS-box domain signature. 83 137 IPR002100 GO:0003677|GO:0046983
Dere10g0713 287 Gene3D - 93 161 IPR036879 GO:0003677|GO:0046983
Dere10g0713 287 PRINTS MADS domain signature 83 103 IPR002100 GO:0003677|GO:0046983
Dere10g0713 287 PRINTS MADS domain signature 118 139 IPR002100 GO:0003677|GO:0046983
Dere10g0713 287 PRINTS MADS domain signature 103 118 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0713 Dere-ChrDere10 12280732 12291877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0713 81 283 MADS-box Gene Family AT2G22540 52.743 9.51e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere10g0713 K-box 1.8e-16 No_clan