Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0712 ATGTCACAATCTGAGAAAGCCAATAGGCATGTCTCTGTGTGTGAGTCACATCCTTTCTCCTATCTTATCCCCTTCCTCTTCCTTCGTTCCTCGTCCCTGTGGATTCCACTGCGTCATTTTGTTCTGATTCGAGTTCCAGTATATAAAAGGAAAGAAAGGGACATGACGAGGCAGAAGATAGAGATAAAAAAGATCGATAACATAACTGCGAGGCAGGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAGGCTAAGGAGCTTTCTACTCTTTGCGATGCTGAGATTGGCCTCATAGTCTTCTCTTCCACTGGAAGGCTCTACGACTATGCTAGCTCAAGTGTGCAGCAGGTGATTGAACGGTACGATGTTCATTCAGACATTCACAGATCAGATATTGACAAGCAGATTGGGAATGAAGGCTACAACAATCTGCGCAAAGAAGTTGCAAACAAGGCTCGTGAACTGAGGCAGTTGAATGGGGAAGAGCTGCAAGAATTCACAATGCAAGAATTACAGGCGCTAGAGCGAATGCTTGAAATGGGTTTGATGCGTGTTTCAAAGGAAAAGGACAAAATGATTGTACAAGAGGTCTGCGAGCTCAAGAGAAAGGGAAAGCAACTGATGGAAGCGAACAGGAGATTAAATCAGGTAGCACATGAACGAGGACAGTCATATGATTCAGGGATTTTGTCCAGCTCATCTGAAACTCCTCAAGACTATATGGATTTTGACACCTCTCTCAAGTTGGGGTTACATTGA 765 0.4392 MSQSEKANRHVSVCESHPFSYLIPFLFLRSSSLWIPLRHFVLIRVPVYKRKERDMTRQKIEIKKIDNITARQVTFSKRRRGLFKKAKELSTLCDAEIGLIVFSSTGRLYDYASSSVQQVIERYDVHSDIHRSDIDKQIGNEGYNNLRKEVANKARELRQLNGEELQEFTMQELQALERMLEMGLMRVSKEKDKMIVQEVCELKRKGKQLMEANRRLNQVAHERGQSYDSGILSSSSETPQDYMDFDTSLKLGLH 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0712 254 Gene3D - 67 136 IPR036879 GO:0003677|GO:0046983
Dere10g0712 254 Coils Coil 202 222 - -
Dere10g0712 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 57 214 - -
Dere10g0712 254 ProSiteProfiles K-box domain profile. 136 226 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g0712 254 SUPERFAMILY SRF-like 56 134 IPR036879 GO:0003677|GO:0046983
Dere10g0712 254 ProSiteProfiles MADS-box domain profile. 55 115 IPR002100 GO:0003677|GO:0046983
Dere10g0712 254 Coils Coil 140 163 - -
Dere10g0712 254 ProSitePatterns MADS-box domain signature. 57 111 IPR002100 GO:0003677|GO:0046983
Dere10g0712 254 MobiDBLite consensus disorder prediction 220 239 - -
Dere10g0712 254 SMART madsneu2 55 114 IPR002100 GO:0003677|GO:0046983
Dere10g0712 254 CDD MADS_MEF2_like 57 132 IPR033896 GO:0000977|GO:0045944
Dere10g0712 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 64 111 IPR002100 GO:0003677|GO:0046983
Dere10g0712 254 PRINTS MADS domain signature 77 92 IPR002100 GO:0003677|GO:0046983
Dere10g0712 254 PRINTS MADS domain signature 57 77 IPR002100 GO:0003677|GO:0046983
Dere10g0712 254 PRINTS MADS domain signature 92 113 IPR002100 GO:0003677|GO:0046983
Dere10g0712 254 FunFam Transcription factor, MADS-box 67 136 - -
Dere10g0712 254 Pfam K-box region 140 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0712 Dere-ChrDere10 12259344 12272038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0712 55 253 MADS-box Gene Family AT2G22540 43.644 1.54e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere10g0712 K-box 3.3e-16 No_clan