Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0680 ATGGATCCTTATTACGAGACCTGCACATATAAAGTTTTCCCACTAGAATCACCTAAAACTGTTGCCACTAACAATTCTGCAAGCGATGATGATCAGTTCTTCAATATAACAGTTACCTGCAAAAACTGGAACTGGCGTATTCCAAGCATGGACTACGATTTTCACACTGCTTCGCATGTTTACTCCAACATCTCAAAGGAGGTAATAGAGGAACTAGCATTCCATATCGTTTTTCTTGATTTCTTTGTTCCTGAAGATGCAAGCAGGTCCATGGTAGTGAAGATTCTGGACTGTGCGAGAAACATGGCTGATAATACACACAAGAACCACAAGGTTTTGAATATGGGTGTATATTTTGAAACTCTCGTGTGGAACTTCACTAACGAAGGTGATGATGATGGAGCTATGGAAGATCAAGGCAATGTGTTGGTGCCTGCAAGTGAATCCTTCATTGAAGGATTGGAGACAGTGAGGGTGGAAGAAGAAGATGATTGTTCAATTTGTCTTGAATATTATAAGGATGATGCAGAAGGTGTTCGTTTGCCTTGCTTACACTTGTTTCATAAAATTTGTATTATTAGTTGGGTGCACAAGGGGAATGTTTGTCCTTTATGTCGTTTTAAGATGCCTATTAGTGATAATTCGTGA 648 0.3935 MDPYYETCTYKVFPLESPKTVATNNSASDDDQFFNITVTCKNWNWRIPSMDYDFHTASHVYSNISKEVIEELAFHIVFLDFFVPEDASRSMVVKILDCARNMADNTHKNHKVLNMGVYFETLVWNFTNEGDDDGAMEDQGNVLVPASESFIEGLETVRVEEEDDCSICLEYYKDDAEGVRLPCLHLFHKICIISWVHKGNVCPLCRFKMPISDNS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0680 215 CDD RING-H2_PA-TM-RING 164 206 - -
Dere10g0680 215 ProSiteProfiles Zinc finger RING-type profile. 165 206 IPR001841 -
Dere10g0680 215 SMART ring_2 165 205 IPR001841 -
Dere10g0680 215 SUPERFAMILY RING/U-box 155 211 - -
Dere10g0680 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 212 IPR013083 -
Dere10g0680 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 210 - -
Dere10g0680 215 Pfam Ring finger domain 163 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0680 Dere-ChrDere10 11870837 11871484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0680 15 209 C3H Transcription Factor Family AT1G68070 26.941 5.94e-15 70.5