Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0675 ATGGGGTTTCACCGGAAGATTCTAGAAGAAATCTGCACCCTCTTCTGCCATGTCAAGGACTCTTCTTGTTTACCCGTCGATCCTGACTGCCGCACCTGCAAGGAAAGCTGCGCCGTCGTGCCCCCTACTGATTACGACCCTCCACCTTCTCCTCCGATCTACATGGACGAGGGAGATTTCGGCAATCCCAGCAGTCCCCACCATCTTTCCACCTTCTTGACTATTGTTATCGCTGTTCTCGCCGCCGCTTTCTTCGCCGTCATCTGCTACGCCGTCTACCGCAGATTCTTCACGAGAAGGACTCCGGAAACAGAGGAGGAGACGCGTGGCGACTTTCTGGATGAGGAACAGGGCCCTATGGTGGACCACCCCATATGGTATATCCGAACCCCGGGTCTCCAGCAATCGATCATCTCTGCGATCACTGTCTGTAAGTATAAGAAAGGTGAGGGTTTGATTGAAGGAACAGAGTGCTCTGTTTGCCTGAGTGAGTTTGAAGAGGACGAGAGTCTCAGGCTTTTGCCTAAGTGTAATCACGCTTTTCATCTTCCTTGTATCGATACTTGGCTTCGATCTCACACCAATTGCCCCATGTGCCGAGCTCCGATCGTCACAAACCCCGCGACGATCATCACCTCGCCGGAGCCGAATGTTGTTAGTTCGAGTAATTCAGAAGAACCCCAGATGGAAATCGTGGAAAATGGAAGGGAAAATAATGGGGAGGTGGAAAACAGAGATGGGGAATTGAGAAATGGAGATGAGGAAGGAGGAGGAGGAGGAAGAAGAGAGATGGTGGCTGAAGAGGAGGTGGAGAATTTGCAGCCCAGAAGAAGATCGGGCTCTCTGGATTCTTCATCTATTGAGAAGATCAATCTTGCTCTTGCTCTTGCTGCTAATAGAACTGCTGTATCTTCAGTGGAATCATCGGCTTCAAAGAGGGTTTCCAAAAGTAGTTCTTCTTCCTTCAGAATAAAGTCTCTTCAGAGTGTTGCAGGTACTTCAATGAAGAGGTCTCGTTCCTTCAATGGAAAGCATCTGCTTTCGTTGTACAGTCGAAGTCAGAGGAAGCCCAATGTTCCTGTGAGGAGCTTTTGA 1095 0.4959 MGFHRKILEEICTLFCHVKDSSCLPVDPDCRTCKESCAVVPPTDYDPPPSPPIYMDEGDFGNPSSPHHLSTFLTIVIAVLAAAFFAVICYAVYRRFFTRRTPETEEETRGDFLDEEQGPMVDHPIWYIRTPGLQQSIISAITVCKYKKGEGLIEGTECSVCLSEFEEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNPATIITSPEPNVVSSSNSEEPQMEIVENGRENNGEVENRDGELRNGDEEGGGGGRREMVAEEEVENLQPRRRSGSLDSSSIEKINLALALAANRTAVSSVESSASKRVSKSSSSSFRIKSLQSVAGTSMKRSRSFNGKHLLSLYSRSQRKPNVPVRSF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0675 364 MobiDBLite consensus disorder prediction 214 229 - -
Dere10g0675 364 SMART ring_2 158 199 IPR001841 -
Dere10g0675 364 SUPERFAMILY RING/U-box 152 206 - -
Dere10g0675 364 MobiDBLite consensus disorder prediction 230 276 - -
Dere10g0675 364 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Dere10g0675 364 CDD RING-H2_EL5-like 157 200 - -
Dere10g0675 364 MobiDBLite consensus disorder prediction 214 282 - -
Dere10g0675 364 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 67 222 IPR044675 -
Dere10g0675 364 MobiDBLite consensus disorder prediction 305 343 - -
Dere10g0675 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 207 IPR013083 -
Dere10g0675 364 FunFam RING-H2 finger protein ATL54 133 206 - -
Dere10g0675 364 Pfam Ring finger domain 157 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0675 Dere-ChrDere10 11804547 11805641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0675 53 254 C3H Transcription Factor Family AT1G72220 44.498 1.35e-49 170