Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0659 ATGGCCCGCATGTGCGGCAGGTGGGGAGATTTATTACCCTTCCATATGTCTGACCTACATATAATAAAAATAATATTTAATGCTTACAAACGGCAGGGAAGGTTAGAAACTTCCTTACTTCTCAGGTGCCGGCGTTCTTCTGTAGCGGAGGCAATGGAGAACGACGACGTCGACATGCAGGGAGCAGAGAACAACGAAGTAGATTTGGATGTCATGAAGAAGCGCTTGAAGGAAATGGAAGACGAAGCTGCTGCTTTGCGGGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGATCTGTGCAAGACCCTGCTGCTGCTGCTGCTGCTGCTGCTGCAAGCCCGGCCAATAAAGAGGAAGTAGATTCTCGATCAGTCTTTGTAGGCAATGTAGACTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTTCAATCATGTGGAACAGTCAACAGAGTCACCATTCGCACTGACAAGTTTGGCCAGCCCAAGGGTTATGCTTATGTGGAGTTCCTTGAAGCAGAAGCTGTTCAGGAGGCTCTTCTGCTGAATGAATCTGAACTACACGGGCGCCAATTAAAGGTAACTACCAAGCGAACCAACATACCTGGGATGAAGCAGTATCGTCCCCGCCGGTCCAACCCATATATGGGATTCCGAGGCAGAATGCCATTTGCACCTCCTTTTGCCTATTCTCTTTATGGATATGGAAAGTTTCCAAGGTATAGAATGTCAATGCGCTACAGTCCCTACTATTGA 756 0.4788 MARMCGRWGDLLPFHMSDLHIIKIIFNAYKRQGRLETSLLLRCRRSSVAEAMENDDVDMQGAENNEVDLDVMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPAAAAAAAAASPANKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEAEAVQEALLLNESELHGRQLKVTTKRTNIPGMKQYRPRRSNPYMGFRGRMPFAPPFAYSLYGYGKFPRYRMSMRYSPYY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0659 251 SMART rrm1_1 124 195 IPR000504 GO:0003723
Dere10g0659 251 CDD RRM_II_PABPs 124 195 - -
Dere10g0659 251 Coils Coil 62 96 - -
Dere10g0659 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 199 IPR000504 GO:0003723
Dere10g0659 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Dere10g0659 251 Gene3D - 59 196 IPR012677 -
Dere10g0659 251 SUPERFAMILY RNA-binding domain, RBD 112 221 IPR035979 GO:0003676
Dere10g0659 251 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 58 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0659 Dere-ChrDere10 11585230 11595876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0659 124 194 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 1.33e-07 50.1