Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0606 ATGTGGACGGACAATAAGGAGCGAGTGATTTCGTCTTTCATGGATTCCTTTCTTCTTTGGGCAACTTTTGCGTTGGATTTGTTGTTAAGGGTTTCTGGCAATGCGGAAGGTGATGCCCTGAATGCATTGAAGAATAACATGGCTGATCCCAACGGTGTTCTTCAAAGTTGGGATGCAACCCTTGTCGATCCCTGCACGTGGTTTCGTGTTATATGCAATAATAATAATAGTGTGACCAATGTTCTTCTTGGAAATGCAAACCTTTCGGGTCAACTGGTGCCCCAGCTTGGACAGCTCTCAAATTTGCAGTACTTGGAACTTTATAGTAATAATATAAGTGGGAAAATCCCAGATGAGCTTGGAAATTTGACAGAGTTGGTGAGCTTGGATCTTTACTCGAACGGATTAACTGGTCCTATCCCAGATACATTGGGCAACCTTAAGAAGCTACGCTTCCTACTTCTCAACAATAACAGCTTGTCAGGAAACATCCCCATGTCATTGACTTCCATTGCCTCTTTGCAGATCATTGATATGTCAAACAACCGGTTAATAGGAGATATCCCAGTCAACGGTTCATTTAGTTTATTTCCTCCCATGAGTTTTGAAAATAATCCTGGGTTGAGACAACAAAATTTCATTCCACTTCCAGCAATTTTCCGAAAGCCACCAACTCCTTCAGGTATTGTTGGAGGAGTTGCTGCTGGTGCTAGTCTGATGGTTTTAGCCCTTGCAGTCGCACTTGCTTTTTGGCAAAGAAGGAAACGAAAGGATCAATTCATTGATGTTCCTGCCGAGGATGTTGAAATAAACCTTGGTCAGCTTAAACGGTTTTCATTGAATGAGCTGCAAGTTGCAACAGATAACTTCAATGAAAAGGGCATCCTGGGAAGAGGTAAATATGGTAAGGTTTATAAAGGGCGCCTTGCTGATGGTTCTCTAGTAGCAATAAAAAGACTTAACAAAGGACACGACCATGGTGAGGAGCAGCAATTTCTAACAGAAGTTAAAATGATTAGCATGGCTGTGCATCGTAAGTTGCTCAAGTTGCATGGATTTTGCATGACAGTAGCAGAACGATTGCTTGTATATCCTTTCATGGTTAACAGAAGTGTAGCATGGTGTTTACGAGAGCGTCCAGATATTCAACCCACACTTGATTGGCAAACACGAAAGCATATCGCGCTGGGTGCTGCTCAAGGACTTGCTTATCTGCATGATCAATGTAATCCTAAGATTATTCATCGTAATGTCAAAGCTGCAAATATATTGCTCAATGAGAAATTTGAAGCAGTTGTTGGAGACTTTGGTTTTGCAAAACTTATGGATTACAAAGATACTCATGTCACCACAGCGGTACATGGTACGGTTGGGCATATAGCACCAGAGTACCTCTCAAATGGAAAGACTTCAGAGAAGACTGATGTTTTCGGTTATGGTGTGATGCTTCTTGAATTAATAACTGGACAACAAGCTTATGATCTAGCATTACTTGCCAATGACAATAATGCTATGTTGCTTGATTGGGTGACAGGACTTGTAAATGACAAGAGGTTAGGAACGCTGGTTGATGCTAATTTACGGGGGAATTATAATGAAGAGGAGGTAGAGCAAGTAACCCAATTGGCCTTACTATGCACGCAAGACTCTCCTATGGAAAGGCCCAAAATGTCAGCAGTGGTAAGAATGCTTGAAGGTGATGGTTTGGCAGAAAGGTGGGAGCAATGGCAGAAAGAGATGTTGAAGCATGATTTCAAGCTCACTCATCATCAAAATTTTAATTTGATGGAAGACTCAACTTCGCGTATCCCACCAGATGAACTATCTGGTCCTCGATGA 1839 0.4182 MWTDNKERVISSFMDSFLLWATFALDLLLRVSGNAEGDALNALKNNMADPNGVLQSWDATLVDPCTWFRVICNNNNSVTNVLLGNANLSGQLVPQLGQLSNLQYLELYSNNISGKIPDELGNLTELVSLDLYSNGLTGPIPDTLGNLKKLRFLLLNNNSLSGNIPMSLTSIASLQIIDMSNNRLIGDIPVNGSFSLFPPMSFENNPGLRQQNFIPLPAIFRKPPTPSGIVGGVAAGASLMVLALAVALAFWQRRKRKDQFIDVPAEDVEINLGQLKRFSLNELQVATDNFNEKGILGRGKYGKVYKGRLADGSLVAIKRLNKGHDHGEEQQFLTEVKMISMAVHRKLLKLHGFCMTVAERLLVYPFMVNRSVAWCLRERPDIQPTLDWQTRKHIALGAAQGLAYLHDQCNPKIIHRNVKAANILLNEKFEAVVGDFGFAKLMDYKDTHVTTAVHGTVGHIAPEYLSNGKTSEKTDVFGYGVMLLELITGQQAYDLALLANDNNAMLLDWVTGLVNDKRLGTLVDANLRGNYNEEEVEQVTQLALLCTQDSPMERPKMSAVVRMLEGDGLAERWEQWQKEMLKHDFKLTHHQNFNLMEDSTSRIPPDELSGPR 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0606 612 FunFam Somatic embryogenesis receptor-like kinase 1 367 584 - -
Dere10g0606 612 ProSiteProfiles Protein kinase domain profile. 290 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0606 612 FunFam Somatic embryogenesis receptor kinase 1 260 366 - -
Dere10g0606 612 Gene3D Ribonuclease Inhibitor 33 214 IPR032675 -
Dere10g0606 612 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Dere10g0606 612 Gene3D Phosphorylase Kinase; domain 1 261 366 - -
Dere10g0606 612 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Dere10g0606 612 SUPERFAMILY Protein kinase-like (PK-like) 271 565 IPR011009 -
Dere10g0606 612 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Dere10g0606 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 21 575 - -
Dere10g0606 612 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515
Dere10g0606 612 FunFam Somatic embryogenesis receptor kinase 1 32 219 - -
Dere10g0606 612 Pfam Protein kinase domain 291 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0606 612 SUPERFAMILY L domain-like 36 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0606 Dere-ChrDere10 10798660 10811534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0606 13 612 Receptor kinase-like Gene Family AT4G33430 64.438 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Dere10g0606 Pkinase 1.1e-41 CL0016