Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0582 ATGGTTGTCTCTGCTCTATTTGAATTAGTGGCCTGGGCTTTGAGGGCTGCCATTTCAGCAGCTAAAACATCAAGGGCTTCAATTTTTGAAGTGATGGAGGCTAAATGCTGGATGATGGGATCTATGAGAGGGGCAGAATCTACGCCAGTGGAATTTCTTGAAAGTACTGCCGCTGTTTCTATTCTGTTCTCGTCTCTCACTCTCACTGTGTTGCCTTTCGTCCTCGGCGAACCAACCCGTAACGTTGTTGGCGAACGATTTTCTCGCCCCCGAAATTTTGATTACATGTTTTGGTTTAAAATGGCAGAATTTGAAGAATATCGATGCTTCATTGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTAAAGGATTCATTTGAAAAGTTTGGAAAGCTTCTTGAGGCAAAGGTGGCTGTTGACAAGTTCTCTGGTCGCTCTCGTGGTTTTGGATTTGTAACATTTGATGATCAGAAAGCAATGGAAGACGCTATTGAGGCTATGAATGGGATGGATTTAGATGGACGAACTATCACTGTTGATAAAGCTAAGCCTCAACAAGGATCAACCAGGGATGATGGTGATCGGTATCGAGAACGTGGTCGTGATCGCAATCGTAGTCGAGATTATGGAGGTGGTCGAGGATCTAATGGAGGCGAGTGCTTTAAGTGCGGTAAACCTGGTCATTTTGCTAGAGAGTGTCCAAGTGAAGGGGCAAGAGGGGGAAGGTATGGTGGCAAGGAAAGTAGATATGGTGGCAGCAGTGGTGGAGGTCACTATGGCCCTGATAGGAATGCTGATCGTTCTTCTGGTGGGCGCAACAGGGATGCTGGTAGTCATGGAGATCATGGAAATGATCGATATAATCGTGATCGTGCTGGACCTTATGACCGACGGGGATCAGGAGGCTTTCGTTCTGGATAG 924 0.4621 MVVSALFELVAWALRAAISAAKTSRASIFEVMEAKCWMMGSMRGAESTPVEFLESTAAVSILFSSLTLTVLPFVLGEPTRNVVGERFSRPRNFDYMFWFKMAEFEEYRCFIGGLSWSTSDRKLKDSFEKFGKLLEAKVAVDKFSGRSRGFGFVTFDDQKAMEDAIEAMNGMDLDGRTITVDKAKPQQGSTRDDGDRYRERGRDRNRSRDYGGGRGSNGGECFKCGKPGHFARECPSEGARGGRYGGKESRYGGSSGGGHYGPDRNADRSSGGRNRDAGSHGDHGNDRYNRDRAGPYDRRGSGGFRSG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0582 307 CDD RRM2_NsCP33_like 108 183 - -
Dere10g0582 307 ProSiteProfiles Zinc finger CCHC-type profile. 221 236 IPR001878 GO:0003676|GO:0008270
Dere10g0582 307 FunFam Glycine-rich RNA-binding protein 10 217 275 - -
Dere10g0582 307 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 101 303 - -
Dere10g0582 307 SMART c2hcfinal6 220 236 IPR001878 GO:0003676|GO:0008270
Dere10g0582 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Dere10g0582 307 MobiDBLite consensus disorder prediction 176 218 - -
Dere10g0582 307 SUPERFAMILY RNA-binding domain, RBD 101 215 IPR035979 GO:0003676
Dere10g0582 307 Gene3D - 217 275 - -
Dere10g0582 307 MobiDBLite consensus disorder prediction 186 210 - -
Dere10g0582 307 MobiDBLite consensus disorder prediction 232 307 - -
Dere10g0582 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 179 IPR000504 GO:0003723
Dere10g0582 307 SMART rrm1_1 108 181 IPR000504 GO:0003723
Dere10g0582 307 MobiDBLite consensus disorder prediction 266 298 - -
Dere10g0582 307 SUPERFAMILY Retrovirus zinc finger-like domains 212 238 IPR036875 GO:0003676|GO:0008270
Dere10g0582 307 Gene3D - 100 216 IPR012677 -
Dere10g0582 307 Pfam Zinc knuckle 220 236 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0582 Dere-ChrDere10 10420747 10424140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0582 109 198 Eukaryotic Initiation Factors Gene Family AT4G34110 35.556 4.33e-08 52.4