Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0560 ATGGCTGCCCTTGTCCCTTATGGTTCGGCATCCCTCAACCATGCACAAATAGCTCGATGCCGAGAACATGAAGAGGATCAGAATCAAGTCCAGGTTCCTAAGGACGAAGATAAAGATATCGACTACTCTGAAAGAGCACAATGGCTTCGAGCCGCTGTACTGGGAGCCAATGATGGGTTGGTTTCAATTGCAGCATTGATGATGGGTGTAGGAGCAGTGAAAACTGATGCGAAAGCCATGCTTCTTGCTGGTTTTGCAGGGACAGTTGCAGGAGCTTGCAGTATGGCTATAGGAGAGTTTGTATCCGTGTACACTCAGTATGAAGTTGAAGCTGCCCAAAGGAAGAGGGATATGATCTGTGAAAATGATGAGAAAGGCATGGAGATGCAGATGGAGAAGAAGAGTACAGTACTGCCTAATCCATTTCAGGCAGCTTTCGCATCAGCAGTGTCATTCAGCATAGGAGCACTGTTTCCTTTGCTTGCAGCTGCATTCATATCAGACTACAATATAAGGCTAATGGTGGTTGTGGGCGTGGCTACCTTAGCTTTGATAGTGTTTGGATTGGTGGGGTCTGTGCTGGGAAAGACTCCTGTTGTGAGATGTTGTGTGAGGGTTGTGTGTGGAGGATGGATGGCTATGGCTCTCACTTTTGGATTAACCAAGTTACTGGGTTCTAGGGGATTGCATCTATATGATTGA 702 0.4672 MAALVPYGSASLNHAQIARCREHEEDQNQVQVPKDEDKDIDYSERAQWLRAAVLGANDGLVSIAALMMGVGAVKTDAKAMLLAGFAGTVAGACSMAIGEFVSVYTQYEVEAAQRKRDMICENDEKGMEMQMEKKSTVLPNPFQAAFASAVSFSIGALFPLLAAAFISDYNIRLMVVVGVATLALIVFGLVGSVLGKTPVVRCCVRVVCGGWMAMALTFGLTKLLGSRGLHLYD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0560 233 CDD Nodulin-21 47 198 - -
Dere10g0560 233 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 22 224 IPR008217 GO:0005384|GO:0030026
Dere10g0560 233 Pfam VIT family 129 221 IPR008217 GO:0005384|GO:0030026
Dere10g0560 233 Pfam VIT family 49 120 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0560 Dere-ChrDere10 10157467 10158168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0560 22 229 Nodulin-like Gene Family AT3G43660 59.615 2.02e-86 253