LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g0557	ATGTCATTCCGGAGCATTGTTCGTGATGTAAGGGATAGTTTTGGGAGCTTATCTAGACGGAGTTTTGATGTTAGGCTGACTGGTCATCACCGAGGAAAGTCTCATGGTTCTTTTCAAGATTTGCATGATCAGCCTTTAGTAATTCAAAACAGCCGCTGGGCTAGCCTACCCCCAGAATTGTTATATGATGTAATTAAAAGGTTAGAGGAGAGTGAGAGCACATGGCCTGCTCGAAAGCATGTTGTTGCATGCGCTGCAGTTTGCCGGTCTTGGAGGAACATGTGCAAAGAAATTGTGAAGAGCCCAGAATTCTGTGGCAAGCTTACTTTCCCTGTGTCCCTGAAGCAGCCAGGACCAAGAGATGGAATGATTCAATGTTTTATCAAAAGAGATAAATCTAACTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCTGACAACATCTCAAGATCAAGTAGCACTTACATTGGAAAGCTGAGATCAAACTTTCTTGGTACGAAGTTCATAATATATGATACACATCCTCCATTCACTTCTGCCCATATACCCCCTCCTGGGACTGGGAGGACAAGCCGAAGGTTTTACTCCAAAAAGGTTTCGCCAAAGGTTCCATCTGGTACTTACAACATAGCTCAGGTGACATATGAATTAAATGTGCTCGGAACACGAGGCCCAAGGAGGATGCACTGCATTATGCATTCAATTCCAGCTTCCGCGCTTGATACTGATGGCACAGTTCCCGGCCAACCCGAGCTGCTTCCTTGCTCCCTTGAGGATTCGTTCCGTAGTATCTCCTTCTCAAAGTCTCTTGATCACTCTATTGAGTTCAGTAGTGCAAGATTTTCTGAGATTGGGGCATCCTGCAGTAACGAGGATGAGGAAGGCAAGATAAGACCCTTGATCCTTAAAAACAAACCTCCAAGATGGCATGAACAGTTGCAATGCTGGTGCCTCAACTTCCGGGGACGGGTAACGGTTGCCTCTGTTAAAAACTTTCAGTTGATTGCTGCCTCCCAGCCAGCTGCTGGCGCACCTACACCATCTCAGCCAGCCCCACCAGATCATGATAAGATAATTCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTCACTATGGATTATCGGTATCCTCTATCTGCTTTCCAGGCTTTCGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG	1287	0.4491	MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSHGSFQDLHDQPLVIQNSRWASLPPELLYDVIKRLEESESTWPARKHVVACAAVCRSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTHPPFTSAHIPPPGTGRTSRRFYSKKVSPKVPSGTYNIAQVTYELNVLGTRGPRRMHCIMHSIPASALDTDGTVPGQPELLPCSLEDSFRSISFSKSLDHSIEFSSARFSEIGASCSNEDEEGKIRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAASQPAAGAPTPSQPAPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g0557	428	FunFam	Tubby-like F-box protein	48	101	-	-
	Dere10g0557	428	Gene3D	-	48	101	-	-
	Dere10g0557	428	Pfam	Tub family	114	423	IPR000007	-
	Dere10g0557	428	ProSitePatterns	Tub family signature 2.	413	428	IPR018066	-
	Dere10g0557	428	PANTHER	TUBBY-RELATED	39	426	-	-
	Dere10g0557	428	Pfam	F-box domain	53	100	IPR001810	GO:0005515
	Dere10g0557	428	SUPERFAMILY	F-box domain	49	97	IPR036047	GO:0005515
	Dere10g0557	428	PRINTS	Tubby superfamily signature	406	428	IPR000007	-
	Dere10g0557	428	PRINTS	Tubby superfamily signature	350	366	IPR000007	-
	Dere10g0557	428	PRINTS	Tubby superfamily signature	332	349	IPR000007	-
	Dere10g0557	428	PRINTS	Tubby superfamily signature	169	185	IPR000007	-
	Dere10g0557	428	PRINTS	Tubby superfamily signature	185	209	IPR000007	-
	Dere10g0557	428	PRINTS	Tubby superfamily signature	237	264	IPR000007	-
	Dere10g0557	428	PRINTS	Tubby superfamily signature	385	404	IPR000007	-
	Dere10g0557	428	FunFam	Tubby-like F-box protein	110	428	-	-
	Dere10g0557	428	Gene3D	Tubby Protein; Chain A	112	422	IPR025659	-
	Dere10g0557	428	CDD	F-box_AtTLP-like	53	97	-	-
	Dere10g0557	428	ProSitePatterns	Tub family signature 1.	350	363	IPR018066	-
	Dere10g0557	428	SUPERFAMILY	Tubby C-terminal domain-like	102	428	IPR025659	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g0557	Dere-ChrDere10	10137975	10140409	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g0557	1	428	TUB Transcription Factor Family	AT1G76900	70.259	0.0	614

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Dere10g0557		Tub	2.5e-116	CL0395