LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g0551	ATGGCGTCGTCGAAGTTAGTCACGACGAATCCGGATCTGCCACGCCAATCTTCTATATGTTCCCTTTCTACCATCCTCGCCGATCTTCAAAACAACACTAACAACAACACCATCACCAACCAAAACCACAGCCACAACAACAACAACGGTGGCGGCGACCCTTCCAAGACCTTGGGTTCTATGAGCATGGACGATCTCCTCAAGTCCATTTACTCTTCTTCGTCCTCCGACCCCAATCACAACCCCAACCCTACCCACCTCCCGTCGGACCCCAATTTCCACCCGACTCCGGCGGATATGGGCACCAAAACGGCGGAGGAGGTGTGGCAGGAGATGGTGGAGGGTGGTGGTGATCAGAGGCGGATGGGTGGAGGGGAGGGTTTGGAGGCCATGACTTTGGAGGATTTTTTGGCCAAGGCTGGGGCTGTCAGGGAGGACGATGTCAGAGGGGTTCCTACCGTTCTGCCTGGCACTGCGAGTTTCCTCGTGGATGCCGCGGCAGCGGCGGCGGTTGCAATCAACGGTGGTGCACAATTCCCGATGCCGCCTGTCCAGGGTAAGGAAGGGTCGTCCATGGAGGTCTTTGGAAATGGGATTGACGGGACAGTTGTTGGAGTAGCAGCATCAGCGGGAAGAGGGAAGAGGAGGGTTGTGGAAGAACCCGTTGATAAGGCGACGCTTCAGAAGCAGAGAAGGATGATAAAAAACAGAGAGTCTGCGGCCAGGTCCAGAGAACGCAAGCAGGCTTACACAGTTGAGCTAGAGACTATGGTAACACAACTCGAGGCAGAGAATGCACAACTATTGAGGGAAATGGCTGAAAAGAAGAGGCAGAGGTTCAAGCAGCTCATGGAATGCCTTATTCCAGTTATGGAAAAGCGTAAACCACCACGGAAGCTTCGGAGAGTGAATTCAGTCCAGTGGTGA	927	0.5415	MASSKLVTTNPDLPRQSSICSLSTILADLQNNTNNNTITNQNHSHNNNNGGGDPSKTLGSMSMDDLLKSIYSSSSSDPNHNPNPTHLPSDPNFHPTPADMGTKTAEEVWQEMVEGGGDQRRMGGGEGLEAMTLEDFLAKAGAVREDDVRGVPTVLPGTASFLVDAAAAAAVAINGGAQFPMPPVQGKEGSSMEVFGNGIDGTVVGVAASAGRGKRRVVEEPVDKATLQKQRRMIKNRESAARSRERKQAYTVELETMVTQLEAENAQLLREMAEKKRQRFKQLMECLIPVMEKRKPPRKLRRVNSVQW	308

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g0551	308	Pfam	bZIP transcription factor	225	278	IPR004827	GO:0003700\|GO:0006355
	Dere10g0551	308	PANTHER	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	15	305	IPR043452	GO:0003700\|GO:0045893
	Dere10g0551	308	CDD	bZIP_plant_BZIP46	228	270	-	-
	Dere10g0551	308	SMART	brlzneu	224	288	IPR004827	GO:0003700\|GO:0006355
	Dere10g0551	308	MobiDBLite	consensus disorder prediction	66	83	-	-
	Dere10g0551	308	MobiDBLite	consensus disorder prediction	33	56	-	-
	Dere10g0551	308	SUPERFAMILY	Leucine zipper domain	228	278	IPR046347	GO:0003700\|GO:0006355
	Dere10g0551	308	FunFam	ABSCISIC ACID-INSENSITIVE 5-like protein 2	227	283	-	-
	Dere10g0551	308	MobiDBLite	consensus disorder prediction	33	98	-	-
	Dere10g0551	308	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	226	278	IPR004827	GO:0003700\|GO:0006355
	Dere10g0551	308	Coils	Coil	251	283	-	-
	Dere10g0551	308	Gene3D	-	227	286	-	-
	Dere10g0551	308	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	231	246	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g0551	Dere-ChrDere10	10097009	10101385	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g0551	103	308	bZIP Transcription Factor Family	AT5G44080	46.047	3.35e-46	156

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Dere10g0551		bZIP_1	6.2e-14	CL0018