Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0542 ATGAAAATTGATCTCTCTTTGAAGATTGATACCAAACAGAAAAAGATAGAAGAAGAAGAAGAAGATGAAGAAGAAGAAAGAGCAAAGGATGGTGATGATGATGAGGGAGAGAAGGAAATGATAGAGGAGGAGGATAAGGAGAAGGAAGAACGTGCTGAAGTCACAGCAGGAGAAATAGAAGATGATGCATCAGTTGAAGAAATTTCTCTCCAGCATAACATAAATTCAAGAATGGAGTTAAGCGTATTACAAATGGAGATGGATCGCATGAAGGAGGAAAATAAAGTGTTGAGAAGAGTGGTGGAGAGAACAATGAAAGACTACTATGATCTTCAAATCAAACTTGCAGTCATCCAGCAGAACAATATCAAGAAAAAGGATCCTCAAATTTCTCTCTCGCTTCAAGACTACAATAATAATAATAATAATCCAAACACAAGCATCATGATCAGTAGTGAAGAAGAAGAAGAAGAAGGACCACCACCGACAAAAACCCCACCAAACACTAATATTACTGAGAGTATTAGTGAGAGTGATTTGGGATTGTCACTGAAAATACAGACAAGCACAAGAAAACAAGATCGAGACAGTAATCACAGAGAAGAATTATTGTCAAGGTTTGGAACAGCTTCTTCATCATCATCATCATCATCAGCGCAACACAAGCTGTTACATGGGATTAATGATCAGTACTTGCCTGCTGGTTTTGCTGCTTCCCATGTTGCCTCCACTGCTCCACCTAACAGAAAGGCTAGGGTTTCAGTTAGAGCAAGATGTGACACGGCCACTATGAATGATGGATGCCAATGGAGAAAATATGGGCAAAAAATTGCGAAAGCGAATCCATGCCCTCGTGCTTACTATCGATGTACTGTAGCCCCGGGTTGCCCCGTCAGGAAACAGGTACAAAGATGCTTAGAGGACACGTCCATCCTAATCACAACCTATGAAGGAACACATAACCATCCACTCCCTGTGGGTGCAACTGCCATGGCGTCTACGGCTTCAGCAGAAGCTTCCTTCATGTTCTTAGACTCAACCAACCTTATCTCTTCACAAGCCTCCTCTTCTTCTTCTTTCATCCCTTCAAACTTCAGAACCACAAACCCTAATGACCCTACTAGAGGCCTTGTCTTCGATCTCACAAATAACCCTAATCATCACCATAATGGCCTCCCATTACTGCGTTTTCCAGCTGCCAGCTCCTCCAGTTACTCCACAGCAGGATTTTCTTGGATAATGCCAAACAGACTCAGCAATTTTCTGAGCCCTAGAGATCAAGTGGTTGGAAAAGGAGAAGAAAATGACAGCACTAATTAA 1320 0.4182 MKIDLSLKIDTKQKKIEEEEEDEEEERAKDGDDDEGEKEMIEEEDKEKEERAEVTAGEIEDDASVEEISLQHNINSRMELSVLQMEMDRMKEENKVLRRVVERTMKDYYDLQIKLAVIQQNNIKKKDPQISLSLQDYNNNNNNPNTSIMISSEEEEEEGPPPTKTPPNTNITESISESDLGLSLKIQTSTRKQDRDSNHREELLSRFGTASSSSSSSSAQHKLLHGINDQYLPAGFAASHVASTAPPNRKARVSVRARCDTATMNDGCQWRKYGQKIAKANPCPRAYYRCTVAPGCPVRKQVQRCLEDTSILITTYEGTHNHPLPVGATAMASTASAEASFMFLDSTNLISSQASSSSSFIPSNFRTTNPNDPTRGLVFDLTNNPNHHHNGLPLLRFPAASSSSYSTAGFSWIMPNRLSNFLSPRDQVVGKGEENDSTN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0542 439 SMART WRKY_cls 264 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere10g0542 439 MobiDBLite consensus disorder prediction 168 188 - -
Dere10g0542 439 MobiDBLite consensus disorder prediction 17 43 - -
Dere10g0542 439 Gene3D WRKY domain 249 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere10g0542 439 SUPERFAMILY WRKY DNA-binding domain 257 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere10g0542 439 Coils Coil 2 29 - -
Dere10g0542 439 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere10g0542 439 Pfam WRKY DNA -binding domain 265 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere10g0542 439 MobiDBLite consensus disorder prediction 1 16 - -
Dere10g0542 439 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 401 IPR044810 GO:0003700
Dere10g0542 439 Coils Coil 73 107 - -
Dere10g0542 439 MobiDBLite consensus disorder prediction 152 201 - -
Dere10g0542 439 FunFam probable WRKY transcription factor 31 249 326 - -
Dere10g0542 439 MobiDBLite consensus disorder prediction 44 58 - -
Dere10g0542 439 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0542 Dere-ChrDere10 9949751 9953391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0542 1 376 WRKY Transcription Factor Family AT1G68150 42.065 2.41e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere10g0542 WRKY 6.4e-24 CL0274