Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0530 ATGAAGCTCTCTCCCTCCCTCAACCCTACACTTTCCTCTTTATTCCTATTGTCCTTCCAAATCTCAATTCCACTCCTCTCGAACTCAGACTTGTCTTTCCATGAAGCCGATGAAGTTGAGGTTTGCAACAAGGTTGCCCATGCCACTGACGAAGTTATTTCAAATGGTTTCGGAACGAAATTCGACAATCTTGGTAGCGATAGAAGACGGCATATTGGTAGGGTTTTCGGAGGTCGCAGTGAAGACAAGCAGAGAGCGAAAAGAGAGGCTTCATCATCGTCGAAAATGCCGAAGTCCAAACGAAATAAAACAGTTACTCTGTCAAAGACAAAGAAAAAGGGGAGGGAACATAAAGAAGCAATAGTGAATGCAATAAAAGAGGCTGCTGAAAAATATAGTTCAGTGTACGTGTTTTCTTTTGAAAACATGAGAAATAAAAAATTCAAGGAGTTCAGGGAGCAACTGAAATCTACCACCAGGTTTTTCTTGGGCTCAAACAAAGTCATGCAGGTCTCTCTAGGTCATTCTGCTGCTGACGAGATTAGACCTGGCCTTCATAAGGTTTCTAAGCTTCTTCGTGGAGATGCTGGGATGCTTTTCACAAATTTGCCTAAAGATGAAGTTGAACGGTTATTTAATGAGTTTGAGGAATATGACTTTGCAAGAACAGGAAGCACTGCAAGTGAAAAGGTGGAGCTCAAAGAAGGTCCTTTGGAGCAGTTCACACATGAGATGGAGCCATTTCTGCGGAAGCAAGGCATGCCTGTCCGGTTAAATAAAGGAGTGGTGGAACTTGTCTCAGATTTTGTTGTTTGTGAGGAGGGAAAGCCCTTGTCACCTGAGGCATCTCGCATTCTGCGTTTGCTAGGGATTAAGATGGCCTTATTTCGACTTCATCTAATATGCAGATGGAGTCCTGACGATTTTGAACTTTACATACAAGGGCCAGATGATTCAGACGTTGAGACCAATTAG 975 0.4297 MKLSPSLNPTLSSLFLLSFQISIPLLSNSDLSFHEADEVEVCNKVAHATDEVISNGFGTKFDNLGSDRRRHIGRVFGGRSEDKQRAKREASSSSKMPKSKRNKTVTLSKTKKKGREHKEAIVNAIKEAAEKYSSVYVFSFENMRNKKFKEFREQLKSTTRFFLGSNKVMQVSLGHSAADEIRPGLHKVSKLLRGDAGMLFTNLPKDEVERLFNEFEEYDFARTGSTASEKVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLLGIKMALFRLHLICRWSPDDFELYIQGPDDSDVETN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0530 324 Gene3D - 125 306 IPR043141 -
Dere10g0530 324 Pfam Ribosomal protein L10 114 215 IPR001790 -
Dere10g0530 324 MobiDBLite consensus disorder prediction 73 115 - -
Dere10g0530 324 FunFam Ribosome assembly factor mrt4 124 224 - -
Dere10g0530 324 CDD Ribosomal_P0_like 116 279 IPR033867 GO:0000027
Dere10g0530 324 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 96 315 - -
Dere10g0530 324 FunFam Ribosome assembly factor mrt4 220 293 - -
Dere10g0530 324 MobiDBLite consensus disorder prediction 73 96 - -
Dere10g0530 324 SUPERFAMILY Ribosomal protein L10-like 115 239 IPR043141 -
Dere10g0530 324 Gene3D - 220 293 IPR043164 -
Dere10g0530 324 Pfam Insertion domain in 60S ribosomal protein L10P 221 291 IPR040637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0530 Dere-ChrDere10 9819225 9832099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0530 110 292 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 21.390 4.18e-09 55.1