Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0517 ATGGATACTAGAGGCCGTCCTCGCGTTGTTGTCAATGGGGTTCGAAGAACCAGAACCTTCCACTACTTCTGGTGCCAAACTTGCCAACGCGCAGTGAGATTACCCTCCTCTGCGAACCCTAATTCCTCTTTCTGCCCCTTTTGTTCCCATCACCTCCGCTTCGAGCTTGATATCACGAGGCCAAGGCTTCTCATGAATACTCCTAACAACTTACACCCTTCACCAGCTACTCAATTGATGAACGGATTGGCTCTCATTCTTGATCCATCTTCGAGGGAGCGAAACGCGAGTTTGGATCAAACACCTCAGTGGGTTGAAGAAACCGAAGGTGGACCAAATTCACAGACTTGGATTACTCTCCGATTCGGGAGACCCACTCCTCCGCCAATGGCCGGCAACGAGGCTCAGAACAACCCGCCGGGGCCGCCTCCGGCGGCGGTTTTCGCCATTGAGGGCTTGCCGACGGTGAAACTGACGCAGAGCAAATTGGCGAGCGATCCGAATTGCGCGATTTGTAAAGACGAGTTTCGGATCGATATGGAAGTGAAGGAGTTGCCGTGCAAGCATTTCTATCATTCCGATTGCATTGAACCATGGCTTCGAATCCACAATACCTGCCCCATCTGCCGCTACGAGATACAAAGCGCTTCTTCAAATAATTATTTGCAGTATGAAGATTTTCAGAATTTTGACTTTAGATTTGGGTTTGGATTTGAAGAAGTTACACATGGTTGGAGTTGGCTTTGGAGCCAGCTTGTTTCTTTCAGGCCTGTACGTGCAGTTCTGGAATGGACTCACAGATATTACTTTGATTTCCAGGAAAATCATGATCGAGGAGGTAAGCTTCTGATCTTGCTAACCCAACTTGCTCTTCGAAAACCTTTTGAAGCACATGCACTCTCACGTTCAATACAAATCTGGCATTCATGTCGTCCTATGAAATAG 945 0.4815 MDTRGRPRVVVNGVRRTRTFHYFWCQTCQRAVRLPSSANPNSSFCPFCSHHLRFELDITRPRLLMNTPNNLHPSPATQLMNGLALILDPSSRERNASLDQTPQWVEETEGGPNSQTWITLRFGRPTPPPMAGNEAQNNPPGPPPAAVFAIEGLPTVKLTQSKLASDPNCAICKDEFRIDMEVKELPCKHFYHSDCIEPWLRIHNTCPICRYEIQSASSNNYLQYEDFQNFDFRFGFGFEEVTHGWSWLWSQLVSFRPVRAVLEWTHRYYFDFQENHDRGGKLLILLTQLALRKPFEAHALSRSIQIWHSCRPMK 314
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0517 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 216 IPR013083 -
Dere10g0517 314 MobiDBLite consensus disorder prediction 95 115 - -
Dere10g0517 314 Pfam Ring finger domain 168 210 IPR001841 -
Dere10g0517 314 SUPERFAMILY RING/U-box 147 216 - -
Dere10g0517 314 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Dere10g0517 314 SMART ring_2 169 209 IPR001841 -
Dere10g0517 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 103 213 - -
Dere10g0517 314 FunFam E3 ubiquitin-protein ligase RING1-like 131 216 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere10g0517 Dere-ChrDere10 9694118 9695062 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0517 1 266 C3H Transcription Factor Family AT1G68180 34.164 1.12e-41 142