Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0498 ATGGGAAGTCCTCAATGTATCAGTAAGGCACTTGATGTGAGGGAGGGAGCTACGAATAGAGAAGTAATGCTTTTAAAAGGAGGTTGCTTTTGGACCTCAGCCTCATCACCATCAAGGGGAATTTCTAGTCCAGCTTGGGTGAGAAGTGCAGTTGCCAGCTCCATCAATAGTAATTCTTCCAATCCACCTTCAATTTTTAGTTTCTCTATTGGTATTCAGAGAGGGAAGATAGGGGAGGATCGAATATTTGATGCACACACCTTACGAATCCAGAATAATCGATATGTACAATGCTCAAAGGAAAGTAAAGGGAATGTGAGTTTCTTTTGTTTAACTTTGTTCTCCTTGTGGAGCTCAGTCTCTGGTTTGCTTTCTCCTACAGGTGTGAACTTTGGAGTGCAAGCTCTCATGAGCATTAAAGCTTCTTTGGTGGATCCTTATACTGCCCTTTATAACTGGGATGGTGATGTTGTGGATCCTTGTAGCTGGGCTACGATCACTTGTTCTCCTGATTGAATTCCAAGCCAGAACATTTCTGGGACTCTATCACCAAGCATTGGAAACTTGACAAATCTCCAAACTGTGCTCTTGCAGGATAATAATATATTAGGACTAATTCCCTTTGAGTTTGGAAGGCTCCAAAAGTTGGAAACTCTTAATCTTTTTGATAATTCCTTTACTGGTCAACTTCCTAGTAGTTTTTCCCAAATGAAGAATCTTCGTTATCTGATGCTAAATGATAACAATCTCGCTGGACAAATTCCTTCCTTTTTGGCTAATGTGACCCAGCTTGCCTTTCTTATTGTAGGCAATCCTTGGATATGTGCCACTGGAACTAAGCAAAACTGCTATAGAACAGCCTTACTTTTTAATTCCTTGAATAGTTGTCAAGTTTCTAACACTATTTCTTGCATTGCTTCTCAAGATTTACAGTCCTTTGGTAGACCTAAAAATCACAAAGTTGCTACAAATAACTTCAGCAGCAAGAACTTGATTGGCAAAGGTGGATTTGGAAATGTGTACAAAAGGTACCTCCCAAATGGTACAGTTATAGTAGCGAAGAGGCTAATTGATGGCAATGCCATTAGAGGTGAGATCCAATTCCAGACTGAAGTTGAGAAGATTAGCTTAGCTGTGCATAGGAACCTCCTTCGCCTCTATGGATTTTCTAAGACAGCTACTGAGAGGGTCTTGGTTTATCCCTACATGTCCAATGGTAGTGTTGCTTCACGTCTTAAAGGAACAAGGAAGAGGATAGCCCAAAGAGCTGCAAGGGGCTTGCTATATTTGCATGAGCAGTATGACCCCAAGATTATTCACAGGGATGTAAAGGCTGCAAATATCTTGCTTGATGATTACTATGAGATTGTGGTAGGGGATTTTGGGTTGGCAAAGCGACTGGATCACCATGATTCTCATGCGACAACAGCTGTGAGAGGCATTGTTGGGCACATAGCCCCAAAGTATCTCTCAACAGGCTAACCAAAGATGTCTGAAGTGGTTCAGATGCTTGAAGGAGGTGGGCTTGTAGAGAAATGGGAAGCCTCACAGAGAGCTGATTCAACAAGAAACAGAAGGAATGAACTCTCTTCAGAGAGATACTCCGATCTTACTGATGACTCTTCATTGCTAGCGCAAGCAATGGAGCTTTCTAGATCAAGGTGA 1665 0.4174 MGSPQCISKALDVREGATNREVMLLKGGCFWTSASSPSRGISSPAWVRSAVASSINSNSSNPPSIFSFSIGIQRGKIGEDRIFDAHTLRIQNNRYVQCSKESKGNVSFFCLTLFSLWSSVSGLLSPTGVNFGVQALMSIKASLVDPYTALYNWDGDVVDPCSWATITCSPDXIPSQNISGTLSPSIGNLTNLQTVLLQDNNILGLIPFEFGRLQKLETLNLFDNSFTGQLPSSFSQMKNLRYLMLNDNNLAGQIPSFLANVTQLAFLIVGNPWICATGTKQNCYRTALLFNSLNSCQVSNTISCIASQDLQSFGRPKNHKVATNNFSSKNLIGKGGFGNVYKRYLPNGTVIVAKRLIDGNAIRGEIQFQTEVEKISLAVHRNLLRLYGFSKTATERVLVYPYMSNGSVASRLKGTRKRIAQRAARGLLYLHEQYDPKIIHRDVKAANILLDDYYEIVVGDFGLAKRLDHHDSHATTAVRGIVGHIAPKYLSTGXPKMSEVVQMLEGGGLVEKWEASQRADSTRNRRNELSSERYSDLTDDSSLLAQAMELSRSR 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0498 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Dere10g0498 554 Pfam QWRF family 31 97 IPR007573 -
Dere10g0498 554 Gene3D Phosphorylase Kinase; domain 1 303 402 - -
Dere10g0498 554 SUPERFAMILY L domain-like 132 302 - -
Dere10g0498 554 FunFam Leucine-rich repeat receptor-like kinase 131 233 - -
Dere10g0498 554 Pfam Protein kinase domain 327 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0498 554 Gene3D Transferase(Phosphotransferase) domain 1 403 520 - -
Dere10g0498 554 SUPERFAMILY Protein kinase-like (PK-like) 311 493 IPR011009 -
Dere10g0498 554 Gene3D Ribonuclease Inhibitor 131 302 IPR032675 -
Dere10g0498 554 SMART serkin_6 326 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0498 554 ProSiteProfiles Protein kinase domain profile. 326 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0498 554 FunFam Somatic embryogenesis receptor kinase 1 298 402 - -
Dere10g0498 554 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 109 494 - -
Dere10g0498 554 Pfam Leucine rich repeat 190 250 IPR001611 GO:0005515
Dere10g0498 554 Pfam Leucine rich repeat N-terminal domain 133 169 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0498 Dere-ChrDere10 9449266 9454872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0498 455 554 Receptor kinase-like Gene Family AT5G16000 56.190 1.36e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Dere10g0498 Pkinase 8.5e-26 CL0016