LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g0487	ATGAAGATTGCTTTGGTGCTTCTCTTTCTCATCTTTTCCATGGTTCTTACTCCAAGCTCAGCAGCCCCTTCTTCTTCTTCTTCTCCCTCTGTTAACACATCCACGTGCCCTATGGATCTGAACTATGTGCTGAGAATCCCATGGAACTCTTCCATGTGTCGAAATTTCCATCCTTTACCATCCTTGACCGAAACCCGAGGAAGCACTTGTTGTCAAACTCTGTTGTCTCTAATGGGCATAGGGCTCGCTCAACACCTCAAAGAAACCTCCATGTTCAACCTCCCGAATCTTGCTACCTCCAATTCCTGCCTCCGTGACTTCCAATCCAAGCTCTCTTCCCTCTATTTCCCTGATTCCCTCGTCTCAACTTGCTTCGACCCGCTTCAATTTGTGATTAGCCCTAACGTCTGCGCGCATATCCAAACAATCCGAGATTGGGTCGGGAAGCTCGGCGAAACAACGCCGCTTAGCACCGGATGCAGAGCGGACCTTTCCGATCAGACTCTTTGCGGTTCGTGTGTGGCGGCGGGGTTTGATGTTCAGCGAGAACTCACTTCCATTGATGGTAACTCTTCCCACTCCAAAGATTGCTTTTACTTCGCTATTCTGTATGCTGCTGGTATTGTGAATGATTTTGGCCCGGAGAGTAATGGTGCTGTGACTTGCATTTTTGGTATGTCGGTTTATTCCCCTGTGGGTTCTGGAGGAAAGGGTCACCATCAAGCTCTTGTGTTTGGGTTGACTGGAGCTGGGGTTGGATTATTAGTCATGTCTGCTTTGTTGGGTCTGTATGTATGGTATGATAGGAAGTTGAGGAGTAGAAAAGGTGGGAGTTTTCGGTTTGATATTGATCCTGAAGAGCAAGGCTCTAGGCCTAGATTGAGACCTAATACTGGGTCAATCTGGTTCAAGATTGAGGAGCTTGAGAAGGCTACTAATGGTTTTTCTTCCAAGAACTTCGTAGGAAGAGGTGGGTTTGGGATGGTTTACATGGGAACTTTGGCTGATGGATCAGTGGTTGCAGTTAAAAGGATTTTGGAATCTGATTTTCAAGGGGATACTGAATTCTGCAATGAGGTGGAGATTATTAGTAATCTGAAGCACCGTAATCTGGTGCCGCTTAGAGGCTGCTGTGTGGTTGATGAAGGTGAGAATTATGATGAAAGAGGTCAAAGATATCTTGTTTATGATTACATGCCAAATGGGAACCTCGAAGATTATCTCTTCCCATCATCAATGGGCAATCAGAATGAAAAGAGATCACTGACTTGGCCACAGAGAAAAAGCATAATCTTGGATGTGGCAAAGGGGTTGGCTTATTTGCATTATGGAGTTAAGCCTGCCATTTATCACAGAGACATCAAGGCCACCAATATACTGCTTGATGCAGATATGAGGGCAAGAGTTGCAGATTTTGGGCTTGCTAAGCAGAGCAGGGAAGGTCAGTCTCATCTCACTACTAGAGTGGCTGGAACTCATGGATATCTAGCCCCAGAATATGCACTTTATGGTCAACTTACTGAGAAGAGTGATGTCTACAGCTTCGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCGCTTGACTTGTCTTCATCTGGATCACCTAGGGCATTCTTGATCACAGATTGGGCATGGTCCTTGGTGAAATCAGGGAACATAGAAGAGGCTTTGGATGCTTCCCTCTTAAAAGATGGGGATTGTCCTAGTTCAAATCCCAAGAGTATAATGGAAAGGTTTTTGTTGGTGGGAATTCTATGTTCTCATGTGATGGTTGCTTTAAGGCCAACAATTTCTGATGCTTTGAAAATGTTGGAAGGTGATGTTGAAGTTCCACAAATCCCCGATCGGCCTATGCCTCTGGGGCATCCTTCATTTTACAATGATGGTAATAATACTTTTAGCATATCTCCAGCATTAAGTGGTCCAAAATTGCATAGTGGAGACATGCTCAGGTAA	1962	0.4501	MKIALVLLFLIFSMVLTPSSAAPSSSSSPSVNTSTCPMDLNYVLRIPWNSSMCRNFHPLPSLTETRGSTCCQTLLSLMGIGLAQHLKETSMFNLPNLATSNSCLRDFQSKLSSLYFPDSLVSTCFDPLQFVISPNVCAHIQTIRDWVGKLGETTPLSTGCRADLSDQTLCGSCVAAGFDVQRELTSIDGNSSHSKDCFYFAILYAAGIVNDFGPESNGAVTCIFGMSVYSPVGSGGKGHHQALVFGLTGAGVGLLVMSALLGLYVWYDRKLRSRKGGSFRFDIDPEEQGSRPRLRPNTGSIWFKIEELEKATNGFSSKNFVGRGGFGMVYMGTLADGSVVAVKRILESDFQGDTEFCNEVEIISNLKHRNLVPLRGCCVVDEGENYDERGQRYLVYDYMPNGNLEDYLFPSSMGNQNEKRSLTWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGNIEEALDASLLKDGDCPSSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDVEVPQIPDRPMPLGHPSFYNDGNNTFSISPALSGPKLHSGDMLR	653

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g0487	653	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	399	614	-	-
	Dere10g0487	653	FunFam	probable receptor-like protein kinase At1g11050	280	398	-	-
	Dere10g0487	653	CDD	STKc_IRAK	321	608	-	-
	Dere10g0487	653	Gene3D	Transferase(Phosphotransferase) domain 1	399	614	-	-
	Dere10g0487	653	ProSiteProfiles	Protein kinase domain profile.	315	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g0487	653	SMART	serkin_6	315	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g0487	653	ProSitePatterns	Protein kinases ATP-binding region signature.	321	343	IPR017441	GO:0005524
	Dere10g0487	653	SUPERFAMILY	Protein kinase-like (PK-like)	294	607	IPR011009	-
	Dere10g0487	653	Gene3D	Phosphorylase Kinase; domain 1	287	398	-	-
	Dere10g0487	653	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	449	461	IPR008271	GO:0004672\|GO:0006468
	Dere10g0487	653	Pfam	SPARK	32	198	IPR043891	-
	Dere10g0487	653	PANTHER	OS01G0750732 PROTEIN	57	614	-	-
	Dere10g0487	653	Pfam	Protein kinase domain	317	531	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g0487	Dere-ChrDere10	9249838	9251799	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g0487	26	653	Receptor kinase-like Gene Family	AT1G11050	65.924	0.0	820

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RKF3	Dere10g0487		Pkinase	3.9e-42	CL0016