Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere10g0483 | ATGGAGAGAGATTTAAGCTCATATAATCTTCACTTAGCCTCTGGCTTGGATGAGAGTTTCCAGAAACATCATAATCACTCAGAACAGCCTCATCCTGAAGAAGCTCATGAGTCTCCATCTTTCAATCTACAGAATGTTTCAAAGCTCATCCTTCCTCCACTGGGTGCTTCAGGTTATAATCAGAATCCAGTTGACTCAAAAAGGTGGATCATATCCCCAATGGATACAAGATACAGGTGTTGGGAGAGCTTGATGGTGCTTCTGGTTGTTTATTCTTCATGGGTTTATCCCTTTGAAGTTGCCTTTATGAACTCTTCTCGTATCTGGAAACTCTTCATTGTGGATAACATTGTTGATCTTTTCTTCGCTGTTGATATTGTTCTCACATTCTTCGTTGCTTACATTGATCGAACAACTCAACTACTAGTTCGTGACTCAAAAAAGATTGCTATCAGGTATGTATCAACATGGTTCCTAATGGATGTGGCATCAACTATTCCATATCAGGCTTTGGGGTATTTGTTGACAGGCAAACACAAAGTAGGTGTTCCTTGCTTGCTCTTGGGCATCCTCAGACTTTGGAGACTCAGAAGGGTCAATCAATACTTCACCAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCAGATGCACAAGGCTTCTCTTTGTAACATTTTTTATAGCTCACTGTGGTGGGTGCCTCTACTACCTTCTAGCTGATAATTATCCCCACAGAGGAAAGACATGGATTGGAGCAGTGAATCCAAACTTCAGAGAAACAAGCATATGGATCAGATACATCTCAGCCATGTACTGGTCCATCACCACCATGACCACTGTAGGGTATGGTGACCTCCATGCTGTGAACTCCATGGAAATGATCTTCACCATCTTCTACATGCTCTTCAACCTTGGCCTCACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTCAAGGCACTTGCCGTACAATGGAATTTAGAAATAGCATTGAAGCAGCATCAAATTTCGTGTGCCGAAATCAGCTGCCTCCAAGGTTAAAAGAGCAGATTGTGGCTTACATGTGCCTGAGATACAAAGCAGAGAGCATGAATCAGCATCAGCTTATTGAGCAGCTACCAAAGTCAATATGCAAAAGCATCTGCCAGAGATTGTTCTTTCCAACTGTAGAGAAAGTCTATCTTTTCAAAGGTGTTTCAAGAGAGATTCTGCTGTCATTGGTTACAAAAATGAAGGCAGAGTATATACCACCAAGAGAGGATGTTATCATGCAAAATGAGGCACCAGAGGACGTTTACATTATAGTTTCTGGTGAAGTGGAGACCATTGACAGTGTAATGGACAAAGAGAAAGTTTTAGGGACTTTACATACCTGGGACATGTTTGGAGAAGTTGGTGCACTTTGTTGCAAGCCTCAGAGCTTTACCTACAGAACCAAGACTCTCACACAGCTCTTAAGACTCAAAACCAGTGATCTTACAGAAGCAATGCAGACTAAAAAGGAAGACAATATACAAATGCTCAAAAATTTCCTTCAGCATGTCAAGCAGCTACAGGATCTAAGTATCAGAGATTTGAAGGTTGATCTGAGTGGAGAAGAAGAGGAACCAAACATGGCTGTGAATTTGCTATCTGCGGCCTGCACAGGCAATGCTGCATTTCTGGAAGAGCTTTTAAAGGCAGGTTTGGATCCTGGTGTTGCAGACTCCAATGGCAAAACCCCATTGCACTTAGCAGCATTAAATGGGCATGAAGAGTGTGTAAAAGTCTTACTTAAGCATGCATGCAATATTCATTCAAAAGACATAAACGGTAACACTGCACTGTGGGATGCCATAGCATCAAAGCATTACTCTATATTCAGAATCCTGTACCAGCTTGCTGCCCTCTCTGATCCACACACAGCAGGTGACCTCCTATGTACAGCAGCAAAAAGAAATGATCTAACAGTGATGAATGAGCTTTTAAAACAAGGGTTAAACATAGAATCGAAAGATCACCATGGCTTAACAGCAATCCAAGTTGCCATGGAAGAAAATCATGAGGACATGGTTCATTTGCTTCTCATGAACGGCTCAGATGTTGCTGGTGCACATACCGATAATTTTCCTACTACAACTATGAATGACATACTGCAAAAGCGCAAAAAAGAGCATCGAATCATAGTTCATGAGACCACACCCAGTAAGGATTTATTGAGGGAACATGAAGTAGAGCAAGAGCACGTTTGGGGAAGACATAATAGGCAAAGCTGTTTAAGAGTAAGCATATATCGAGGTCATCCTTTATTGAGAAGAGAAAAAGGTTGCATTGAAGCTGGTAAGCTGATAAGGTTGCCTAAGTCACTAGAGGAGCTCAAGAGCATAGCAGGTGAAAAGTTTGCGTTTGATGCAAACGATGCAATAGTGACCGACGAAGGAGGAGCAGAAATAGACTCTATTGATGTGATCAGAGATAATGACAAACTTTTTATTGTTGAATAG | 2493 | 0.4152 | MERDLSSYNLHLASGLDESFQKHHNHSEQPHPEEAHESPSFNLQNVSKLILPPLGASGYNQNPVDSKRWIISPMDTRYRCWESLMVLLVVYSSWVYPFEVAFMNSSRIWKLFIVDNIVDLFFAVDIVLTFFVAYIDRTTQLLVRDSKKIAIRYVSTWFLMDVASTIPYQALGYLLTGKHKVGVPCLLLGILRLWRLRRVNQYFTRLEKDIRFSYFWVRCTRLLFVTFFIAHCGGCLYYLLADNYPHRGKTWIGAVNPNFRETSIWIRYISAMYWSITTMTTVGYGDLHAVNSMEMIFTIFYMLFNLGLTAYLIGNMTNLVVQGTCRTMEFRNSIEAASNFVCRNQLPPRLKEQIVAYMCLRYKAESMNQHQLIEQLPKSICKSICQRLFFPTVEKVYLFKGVSREILLSLVTKMKAEYIPPREDVIMQNEAPEDVYIIVSGEVETIDSVMDKEKVLGTLHTWDMFGEVGALCCKPQSFTYRTKTLTQLLRLKTSDLTEAMQTKKEDNIQMLKNFLQHVKQLQDLSIRDLKVDLSGEEEEPNMAVNLLSAACTGNAAFLEELLKAGLDPGVADSNGKTPLHLAALNGHEECVKVLLKHACNIHSKDINGNTALWDAIASKHYSIFRILYQLAALSDPHTAGDLLCTAAKRNDLTVMNELLKQGLNIESKDHHGLTAIQVAMEENHEDMVHLLLMNGSDVAGAHTDNFPTTTMNDILQKRKKEHRIIVHETTPSKDLLREHEVEQEHVWGRHNRQSCLRVSIYRGHPLLRREKGCIEAGKLIRLPKSLEELKSIAGEKFAFDANDAIVTDEGGAEIDSIDVIRDNDKLFIVE | 830 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere10g0483 | 830 | PANTHER | POTASSIUM CHANNEL AKT1 | 43 | 829 | IPR045319 | GO:0005249|GO:0006813 | |
| Dere10g0483 | 830 | ProSiteProfiles | Ankyrin repeat profile. | 671 | 703 | IPR002110 | GO:0005515 | |
| Dere10g0483 | 830 | SMART | cnmp_10 | 398 | 515 | IPR000595 | - | |
| Dere10g0483 | 830 | Gene3D | - | 538 | 636 | IPR036770 | - | |
| Dere10g0483 | 830 | ProSiteProfiles | Ankyrin repeat profile. | 574 | 606 | IPR002110 | GO:0005515 | |
| Dere10g0483 | 830 | SMART | ANK_2a | 574 | 603 | IPR002110 | GO:0005515 | |
| Dere10g0483 | 830 | SMART | ANK_2a | 639 | 667 | IPR002110 | GO:0005515 | |
| Dere10g0483 | 830 | SMART | ANK_2a | 541 | 570 | IPR002110 | GO:0005515 | |
| Dere10g0483 | 830 | SMART | ANK_2a | 607 | 638 | IPR002110 | GO:0005515 | |
| Dere10g0483 | 830 | SMART | ANK_2a | 671 | 700 | IPR002110 | GO:0005515 | |
| Dere10g0483 | 830 | Pfam | Cyclic nucleotide-binding domain | 418 | 502 | IPR000595 | - | |
| Dere10g0483 | 830 | SUPERFAMILY | cAMP-binding domain-like | 326 | 517 | IPR018490 | - | |
| Dere10g0483 | 830 | FunFam | Potassium channel KAT3 | 80 | 322 | - | - | |
| Dere10g0483 | 830 | SUPERFAMILY | Voltage-gated potassium channels | 73 | 321 | - | - | |
| Dere10g0483 | 830 | PRINTS | EAG/ELK/ERG potassium channel family signature | 312 | 321 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Dere10g0483 | 830 | PRINTS | EAG/ELK/ERG potassium channel family signature | 115 | 125 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Dere10g0483 | 830 | PRINTS | EAG/ELK/ERG potassium channel family signature | 268 | 285 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Dere10g0483 | 830 | PRINTS | EAG/ELK/ERG potassium channel family signature | 294 | 305 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Dere10g0483 | 830 | PRINTS | EAG/ELK/ERG potassium channel family signature | 126 | 135 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Dere10g0483 | 830 | ProSiteProfiles | Ankyrin repeat region circular profile. | 671 | 698 | - | - | |
| Dere10g0483 | 830 | FunFam | Potassium channel KAT2 | 386 | 522 | - | - | |
| Dere10g0483 | 830 | Gene3D | - | 637 | 721 | IPR036770 | - | |
| Dere10g0483 | 830 | Gene3D | Jelly Rolls | 366 | 537 | IPR014710 | - | |
| Dere10g0483 | 830 | ProSiteProfiles | KHA domain profile. | 757 | 830 | IPR021789 | - | |
| Dere10g0483 | 830 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 398 | 517 | IPR000595 | - | |
| Dere10g0483 | 830 | CDD | CAP_ED | 398 | 511 | IPR000595 | - | |
| Dere10g0483 | 830 | Pfam | Ion transport protein | 79 | 324 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Dere10g0483 | 830 | Gene3D | - | 79 | 322 | - | - | |
| Dere10g0483 | 830 | PRINTS | Ankyrin repeat signature | 575 | 590 | IPR002110 | GO:0005515 | |
| Dere10g0483 | 830 | PRINTS | Ankyrin repeat signature | 687 | 701 | IPR002110 | GO:0005515 | |
| Dere10g0483 | 830 | Pfam | Ankyrin repeats (3 copies) | 548 | 629 | IPR002110 | GO:0005515 | |
| Dere10g0483 | 830 | ProSiteProfiles | Ankyrin repeat region circular profile. | 574 | 605 | - | - | |
| Dere10g0483 | 830 | Pfam | KHA, dimerisation domain of potassium ion channel | 757 | 828 | IPR021789 | - | |
| Dere10g0483 | 830 | SUPERFAMILY | Ankyrin repeat | 545 | 699 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere10g0483 | Dere-ChrDere10 | 9194835 | 9202789 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere10g0483 | 1 | 579 | Ion Channels | AT4G22200 | 69.416 | 0.0 | 833 |