Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0477 ATGCGGATCGCATTGTCTTTTGCTGATGCTGGAAAAGGTGCCTTTCTTGGAAGTATAGAAATGGCAGGTCATGGATATTGTATCGCTCTCTTTGGCTCATCAATTTTTAGTGGTTACAAATTACATTTGAATGCTCACAGTCAAACCAATTCAACCGGTGATAAGCTTCCGAAAGTTAATTGGTTGCAGCATGCCAGTGCACATGAGAACTTTTCGTGTCAAAACAGGTTCTTGACTTCCAATTTTCTATTCTCCTTGCCAACTCAAAAACCTTGCTCTGAAGAAGCCTTGCATGGGAGATTTGTAGTTAGTCAAAATCAAAATATTCAAAGTTTGCAGAGAGCGCAAGTTGAAAAGGCTTGGCGAGCTCTTTCAAGTCTACAGATTTCTTGTAGGAACTATGCCAAACCTGGAAAAACTGCAAAAATCACTCCTCCAGTTCTTGCAGACAAGAGAACAACTGCCTTGTCAAGAAGCTCTGAGAATGATAGATGTTCTCCAAATTTACAAAATTATAAAGTCTCAAGTGAAAAAAAGGCCAAATCCAGTCAATATTTTCCACCAAATAATCCTATAGCTGAAGAAGGGGGTGGTTTGAGGTGCCCTGATGAAACAAGAACTCCAACAGTCAATAGTCATTATTCTCGAAGTTTGGATGGTTCAGTGAACAATCATACTAAGTATACTGCTATAGTCAATGAGTCTACAAATTGTATGGCTGGCAACATTGATGATGACGACAACATACTTGAGAACATTGATGTCGACCAAATAGTAGAAAACTACCAGTCAACTTGCACCCCTCAACCATCAATAACCAAGCTTCCTCCTATTTCTGCAACTATTGATCCAAATAGTGTTGCTAGACAAGGGGAACATTGTTTGCCACCAGAGTTGTGCTCAGATTGCGTTCATGGTTATAAGGTAGGGCTTTGCCCTGGAGCAGCAAACCATTTGCAGGAATGGAAGGACAATCTGATTGCTATATCCAATGAACTTCTTGACAATGTTGACAACCTCAGTTCTATGCAGATAGCAAAGCTTCGCCAAGACAGGTCACAGTTAAATAGCCAAATTCAGCAGCTTGAAAGATATATTCACTCTACTAAACTTGATGAAGAAAGACAAAAGTCACATTTTTCTGCGTCCACAGCACCTCCTTCATCTTTCCAGTTTGAAACACCAAAGCAAACTGTCCTCAGGAGTGGACCTATGAGCTACGATACCCAGGTTTATATGAGTAATGAGCCATGCTGGTCATCTTTCCAGTCCTTTTCATACTCTTCTGTAGATAAGTATGGCATGCAATCAGGTCCAATGGAGAGAGAAACATTTATTCCAAAGATTATTGAAGTTAATTATATTGAAGGTTCTGCAGACAAACGTTGGAGCGACCAAAATTTCCCTTGGACAAAAGAGCTGGAGGCTAACAATAAAAAGGTTTTTGGAAATCACTCATTCCGTCCCAATCAGAGGGAGGTCATTAATGCCACCATGAGTGGATATGATGTTTTTGTCTTAATGCCAACAGGTGGAGGGAAGAGTCTGACCTATCAGCTTCCTGCTCTCATATGTCCGGGTATAACATTAGTAATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATTATGCATCTATTGCAGGCAAATATACCTGCTACTTACTTAAGTGCCAATATGGAATGGTATGAACAACAGGAGATCCTTAGAGAAATTAATTCTGATTATTGTAAATACAGGTTATTATATGTGACACCAGAAAAGGTTGCCAAAAGTGACGTTCTTCTGCGGCACTTGGAGAGTTTACATGTTCGTGAGTTGCTTGCTAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCTGATTATCAGGGCCTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACGGCTACAGCTACAGCCAGTGTAAAAGAAGATGTTGTTCAAGCTCTTGGTCTTGTCAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAACTTATGGTATTCTGTTATCCCCAAGACAAAAAAGTGCTTGGAGGACATTGATAAATTCATTAGGGAAAATCACTTTGACGAATGTGGCATTATTTATTGTCTTTCACGAATGGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGTGGACATAAAGCTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGAGCTTTTATTCAAAAGCAATGGAGCAAAGATGAAATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTTCGCTTTGTAATTCATCATTCTCTCCCAAAATCTATTGAAGGCTACCACCAGGAGTGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTATTATATTACAGCTATAGCGACTATATACGAGTTAAGCACATGTTAAGTCAAGGAGCAATGGAACAAAGTCCCATGACACCTGGATATAATCGTTCAAATTTGACAAATTCAGGGAGGGTACTGGAAACTAACACTGAAAACCTTTTGAGAATGGTAAGTTATTGTGAAAATGATGTTGATTGTCGACGACTTCTGCAGCTTGCTCATTTTGGGGAAAGGTTTGATTCTGTAACCTGTAAGAAAACATGCGACAATTGTTTGAAGATCAAAAGTTTTATTGAGAAGGATGTCACAGAGATCTCAAAGCAATTGGTTGAACTAGTCAAGCTAACGGGGCAGAAGTTTTCATCATCTCATATCTTAGAAGTGTACCGGGGTTCCTTAAGCCAGTTTGTCAAGAAACACCGACATGAAACAGTACGCTTTCATGGTGCTGGGAAGCATTTAGCTAAAGGTGAGGCTTCCCGTATATTGCATCATCTTGTTATTGAGGATTTTCTTGTCGAGGATGTAAAGAAAAGTGATATTTATGGATCAGTCTCATCAGTAGTGAAGGTAAATGAGCCCAAGGTCCGAAATCTGTTGTCTAGTGGGCAGAGAATTATATTAAGATTTCCTTCGTTGGTAAAAACTTCAAAGTTTGGGACATCAGATGTAACGCCAGCTAAAGGCTCTCTGACATGTGACAAGCTAAATCTTCCACAGAATGACACTCCTGGCCAGACTCAAACTGAAGTGGACTTGAATCTTTCAGCTAAGTTGTACACTGCCCTCCGGATGCTGCGGACAGCCATTGTCAAAGAAGCCGGAGAGGGTGTTATGGCTTACCACATATTTGGTAACGCTACACTGCAGCAAATAAGCAAGAGAGTACCCAGATCAAAGGAAGAACTCCTTGAGATTAATGGCATTGGCAAGGCTAAGGTAAGCAAGTATGGAGATCGTTTACTGGAAACCATTGAAAATACCATAAAGGAATATTACAAGTTGGACAAAAACACCAGCGGGAGCAATGAGAGTACTGACTCTGCTAAAAGGAGACGAGAGTCAAATAGAGACCCTAATGCAAATGGGGATGAAGATGACTTCACCAAAAGTACTGGGCGTTCAAAGAAAAGGACCGTAAAGAGGCTGAATAAAAATGCTGTGGTTTATGATTCTCCAGAAGATTATTACATAGATTGCTTAGATGATGATCAAGATTTTGACAATATAGAAAATGCTGCATTGGATAAAATAAATCGGAAGAATGGTGAAGGAAGAGTTCCTCCTCAGTGGACATCTTGA 3708 0.4008 MRIALSFADAGKGAFLGSIEMAGHGYCIALFGSSIFSGYKLHLNAHSQTNSTGDKLPKVNWLQHASAHENFSCQNRFLTSNFLFSLPTQKPCSEEALHGRFVVSQNQNIQSLQRAQVEKAWRALSSLQISCRNYAKPGKTAKITPPVLADKRTTALSRSSENDRCSPNLQNYKVSSEKKAKSSQYFPPNNPIAEEGGGLRCPDETRTPTVNSHYSRSLDGSVNNHTKYTAIVNESTNCMAGNIDDDDNILENIDVDQIVENYQSTCTPQPSITKLPPISATIDPNSVARQGEHCLPPELCSDCVHGYKVGLCPGAANHLQEWKDNLIAISNELLDNVDNLSSMQIAKLRQDRSQLNSQIQQLERYIHSTKLDEERQKSHFSASTAPPSSFQFETPKQTVLRSGPMSYDTQVYMSNEPCWSSFQSFSYSSVDKYGMQSGPMERETFIPKIIEVNYIEGSADKRWSDQNFPWTKELEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATYLSANMEWYEQQEILREINSDYCKYRLLYVTPEKVAKSDVLLRHLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVIPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKAAFYHGSMDPAQRAFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSQGAMEQSPMTPGYNRSNLTNSGRVLETNTENLLRMVSYCENDVDCRRLLQLAHFGERFDSVTCKKTCDNCLKIKSFIEKDVTEISKQLVELVKLTGQKFSSSHILEVYRGSLSQFVKKHRHETVRFHGAGKHLAKGEASRILHHLVIEDFLVEDVKKSDIYGSVSSVVKVNEPKVRNLLSSGQRIILRFPSLVKTSKFGTSDVTPAKGSLTCDKLNLPQNDTPGQTQTEVDLNLSAKLYTALRMLRTAIVKEAGEGVMAYHIFGNATLQQISKRVPRSKEELLEINGIGKAKVSKYGDRLLETIENTIKEYYKLDKNTSGSNESTDSAKRRRESNRDPNANGDEDDFTKSTGRSKKRTVKRLNKNAVVYDSPEDYYIDCLDDDQDFDNIENAALDKINRKNGEGRVPPQWTS 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0477 1235 CDD DEXHc_RecQ 475 677 - -
Dere10g0477 1235 CDD SF2_C_RecQ 678 810 - -
Dere10g0477 1235 SUPERFAMILY HRDC-like 1058 1131 IPR010997 GO:0000166|GO:0044237
Dere10g0477 1235 Pfam DEAD/DEAH box helicase 489 657 IPR011545 GO:0003676|GO:0005524
Dere10g0477 1235 Pfam RecQ zinc-binding 812 894 IPR032284 -
Dere10g0477 1235 FunFam ATP-dependent DNA helicase RecQ 460 677 - -
Dere10g0477 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 676 944 IPR027417 -
Dere10g0477 1235 ProSiteProfiles HRDC domain profile. 1055 1137 IPR002121 GO:0003676
Dere10g0477 1235 Gene3D HRDC domain 1051 1139 IPR044876 -
Dere10g0477 1235 Pfam RQC domain 900 1014 IPR018982 GO:0006260|GO:0006281|GO:0043138
Dere10g0477 1235 ProSiteProfiles Rhodanese domain profile. 710 752 IPR001763 -
Dere10g0477 1235 FunFam ATP-dependent DNA helicase Q-like 4A 1051 1137 - -
Dere10g0477 1235 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 609 618 IPR002464 -
Dere10g0477 1235 SMART hrdc7 1055 1137 IPR002121 GO:0003676
Dere10g0477 1235 SMART ultradead3 483 686 IPR014001 -
Dere10g0477 1235 MobiDBLite consensus disorder prediction 176 219 - -
Dere10g0477 1235 Gene3D - 678 896 IPR027417 -
Dere10g0477 1235 MobiDBLite consensus disorder prediction 205 219 - -
Dere10g0477 1235 Gene3D - 901 1011 IPR036388 -
Dere10g0477 1235 SMART RQC_2 903 1014 IPR018982 GO:0006260|GO:0006281|GO:0043138
Dere10g0477 1235 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 695 840 IPR001650 -
Dere10g0477 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 819 IPR027417 -
Dere10g0477 1235 Gene3D - 451 677 IPR027417 -
Dere10g0477 1235 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 495 670 IPR014001 -
Dere10g0477 1235 Pfam Helicase conserved C-terminal domain 694 800 IPR001650 -
Dere10g0477 1235 Coils Coil 345 365 - -
Dere10g0477 1235 FunFam Bloom syndrome, RecQ helicase 678 898 - -
Dere10g0477 1235 MobiDBLite consensus disorder prediction 1148 1176 - -
Dere10g0477 1235 PANTHER DNA HELICASE RECQ FAMILY MEMBER 457 1145 - -
Dere10g0477 1235 Pfam HRDC domain 1059 1127 IPR002121 GO:0003676
Dere10g0477 1235 NCBIfam RecQ family ATP-dependent DNA helicase 479 954 IPR004589 GO:0004386|GO:0006310
Dere10g0477 1235 MobiDBLite consensus disorder prediction 1138 1179 - -
Dere10g0477 1235 SMART helicmild6 720 801 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0477 Dere-ChrDere10 9124890 9134294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0477 709 832 Eukaryotic Initiation Factors Gene Family AT3G19760 24.409 3.39e-07 52.4