Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0470 ATGCGTACATCACTCACACATTCTATTACAGTCTCTCCATCTGTGAATGACTCGTCTCGAACCTTCCGACATGGACATGATCGTGTTGAAATGGATAGTCAAGCTGAAAATTCCCAGAAGCCTCCATGCAAGGGGGTGAAAGGCGTTGAAGAATTAGTTTTCTTGCATGGTGACTTGGATCTACACATAATAGAAGCAAAGTCTCTTCCGAATTTGGATTTATCTACTGAAACAGTGAGAAAATGTTTCACTATAGGCAACAATTGCACACCTCCCTTTGTAAAAGGACTCAAGACACACTCTGGGAAACATAAAATGATCACTAGTGATCCTTATGTCTCTGTCTCCCTAGCAGGGGCTACTGTAGCTCAAACTCGAATCATTCCTAATTGTGAGAACCCTTTGTGGGATGAACATTTTAATGTCCCAGTTGCTCACCCTGTTCAGAAAATTGTGTTTCTTGTGAAGGATGATGATCTTCTTGGGGCTGAACTTATTGGCGTAGTGGAGATATCTGTTGAGAAGATTTTGTCAGGAAACACTGTTAACGATTGGTTTCCCATTATTGGCCATTTTGGAAATTGCTTAAAACCTTATCCTGAGTTGCATATTTCTATGAAGTACGTGCCAGTTGGAGACAGTAATAGGACAAGTTACGTAGGTGTTCCTAATACATATTTTCCTCTCCGGAAAGGAGGGAGTCTGACTCTTTATCAGGATGCACATGTACCAGATGGTATGCTACCTGAAATTCCACTTGAGGGTGGAAAAGTTTTTCACCATGGTAAATGTTGGGAGGATATATGCCATGCAATTTTGGAAGCTCACCACCTAATTTATATTATAGGATGGTCTGTTTACCACCCTGTAAAGCTTGTTAGAGAACCAACAAAACCCATACCTGCTGGTGGAGAGCTTTCACTTGGAGAATTGTTAAAATATAAGTCACAAGAAGGGGTCCGCGTGGTCATGCTGATTTGGGATGACAAAACATCACACGACACCTTTTTCCTGAAAACTGAAGGTGTCATGCAGACCCATGACGAAGCAACCAAAAAATTCTTTAAACACTCTACTGTTCATTGTGTGCTTTCTCCACGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGTTGTGGGAACTCTTTTTACACATCATCAGAAGTGTGTGCTCCTTGACACTCAAGCTTCTGGGAATAATAGGAAAATAACTGCTTTTATTGGTGGCCTGGATCTGTGTGATGGCAGATATGATACTCCTCAGCATCGACTCTTTGATGGTCTTGATACTGTCTTTAAAGATGATTTCCATAATCCTATACTTCCGTCGAGTTATACTGGAGGACCAAGGGAACCATGGCATGACTTACATTGCAAAGTAGAGGGTCCAGCTGCATATGATATATTGACCAATTTTGAGCAAAGATGGAGGAAAGCAAAAAAATGGCGTAATCTTAGACTAAAAAAGGTTACAAATTGGCATGATGATGCTTTACTAAGGCTAGATCGAATATCATGGATCGTCACACCATCTACTGGTGGTGCTAATAATGACACCAATGTCTATGTAACTGAAGAAAACGATCCTGAGACCTGGAATGTGCAGGTATTTCGGTCCATAGATTCTGGATCTGTCAAGGGTTTTCCAAAGGATGTTATGGAAGCCAAGGCTCAGAATCTTTTCTGTGGAAAAAACTTGAAAGTTGATAAAAGCATCCATGCTGCTTATGTAAATGCAATAAGATCGGCTAAGCACTTCATATATATAGAGAATCAGTACTTTCTTGGATCTTCATATCATTGGCCTTCGTACAAAACTGCAGGTGCAAATAACTTGGTTCCTATGGAGTTGGCTTTGAAAATTGCCAGCAAGATCAGTGCAAAGGAACGTTTTTCTGTGTATATAGTTATCCCAATGTGGCCAGAAGGGGTTCCTTCAAGTGCTGCTGTGCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAGGATTATTGCAGATGCTCTTAAAAATGCAGGTCTCTCGGATCGCTCTCATCCACAAGATTATCTTAATTTTTATTGCCTTGGAAAACGTGAGCCTCAAATTTCTGAAAGTCCATCACTGGCATTTCAGTCAGCTGAAAACCGTCTTTTGGCATCATTGAAAAAATACAAACGTTTTATGATTTACGTTCATGCCAAAGGAATGATAGTTGATGATGAACACATAATAATGGGTTCTGCAAATATTAACGAGAGATCCTTGGATGGTTCAAGGGACACAGAAATCGCTATGGGTGCTTATCAGCCAAAATATACATGGGCAGGAAAGATGGCTCATCCACATGGCCAGGTGTATGGTTACCGAATGTCACTCTGGGCCGAGCATCTTGGTAGTGTTGAGGATACTCTTGATGAACCAGAGAGCCTGCAATGTATGAGATACGTGAACAATGTTGCCAAACATAACTGGGGTGCTTATGTATCTGATGATGAAGGGACAATGTGGGGACACTTGATGCAGTATCCAGTTCAGGTTAGTGCTGATGGAAGAGTCAGTGCACTTCCTGATCATGAGACCTTTCCTGATGTTGGTGGTAAAATTCTTGGATCACCCAACTCTCTTCCCGATGCACTAACCACATGA 2643 0.4124 MRTSLTHSITVSPSVNDSSRTFRHGHDRVEMDSQAENSQKPPCKGVKGVEELVFLHGDLDLHIIEAKSLPNLDLSTETVRKCFTIGNNCTPPFVKGLKTHSGKHKMITSDPYVSVSLAGATVAQTRIIPNCENPLWDEHFNVPVAHPVQKIVFLVKDDDLLGAELIGVVEISVEKILSGNTVNDWFPIIGHFGNCLKPYPELHISMKYVPVGDSNRTSYVGVPNTYFPLRKGGSLTLYQDAHVPDGMLPEIPLEGGKVFHHGKCWEDICHAILEAHHLIYIIGWSVYHPVKLVREPTKPIPAGGELSLGELLKYKSQEGVRVVMLIWDDKTSHDTFFLKTEGVMQTHDEATKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLLDTQASGNNRKITAFIGGLDLCDGRYDTPQHRLFDGLDTVFKDDFHNPILPSSYTGGPREPWHDLHCKVEGPAAYDILTNFEQRWRKAKKWRNLRLKKVTNWHDDALLRLDRISWIVTPSTGGANNDTNVYVTEENDPETWNVQVFRSIDSGSVKGFPKDVMEAKAQNLFCGKNLKVDKSIHAAYVNAIRSAKHFIYIENQYFLGSSYHWPSYKTAGANNLVPMELALKIASKISAKERFSVYIVIPMWPEGVPSSAAVQEILFWQGQTMSMMYRIIADALKNAGLSDRSHPQDYLNFYCLGKREPQISESPSLAFQSAENRLLASLKKYKRFMIYVHAKGMIVDDEHIIMGSANINERSLDGSRDTEIAMGAYQPKYTWAGKMAHPHGQVYGYRMSLWAEHLGSVEDTLDEPESLQCMRYVNNVAKHNWGAYVSDDEGTMWGHLMQYPVQVSADGRVSALPDHETFPDVGGKILGSPNSLPDALTT 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0470 880 Pfam PLD-like domain 580 762 IPR025202 -
Dere10g0470 880 Gene3D C2 domain 52 208 IPR035892 -
Dere10g0470 880 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 383 418 IPR001736 GO:0003824
Dere10g0470 880 Pfam Phospholipase D Active site motif 384 418 IPR001736 GO:0003824
Dere10g0470 880 Pfam C2 domain 57 188 IPR000008 -
Dere10g0470 880 SUPERFAMILY Phospholipase D/nuclease 559 810 - -
Dere10g0470 880 Pfam Phospholipase D C terminal 800 870 IPR024632 -
Dere10g0470 880 SMART pld_4 383 418 IPR001736 GO:0003824
Dere10g0470 880 SMART pld_4 726 753 IPR001736 GO:0003824
Dere10g0470 880 MobiDBLite consensus disorder prediction 1 19 - -
Dere10g0470 880 SUPERFAMILY Phospholipase D/nuclease 222 488 - -
Dere10g0470 880 Gene3D Endonuclease Chain A 257 501 - -
Dere10g0470 880 SMART C2_3c 58 185 IPR000008 -
Dere10g0470 880 CDD C2_plant_PLD 53 209 - -
Dere10g0470 880 MobiDBLite consensus disorder prediction 1 23 - -
Dere10g0470 880 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 55 211 IPR035892 -
Dere10g0470 880 Gene3D Endonuclease Chain A 528 774 - -
Dere10g0470 880 PIRSF PLD_plant 45 880 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Dere10g0470 880 PANTHER PHOSPHOLIPASE D 50 869 IPR015679 -
Dere10g0470 880 ProSiteProfiles C2 domain profile. 38 186 IPR000008 -
Dere10g0470 880 FunFam Phospholipase D delta 255 499 - -
Dere10g0470 880 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 726 753 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0470 Dere-ChrDere10 9033006 9067073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0470 47 879 Phospholipase D Gene Family (Wang group) AT2G42010 53.172 0.0 919