Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0468 ATGGTTTTACGTACAAACCTCCAGCTTATTGCCTACTCACAAGAGATTGTAGATGGACAACCAATTCTTGTTTCTTCGAATTGTCTTCCAATCAAGGCTTTGAACTTTGAACCTGCTGGCCATGCCTTCCATTCTGCTGCCCTTAATTTTCTTGGTGTTGAGGATGTTAATGAAGATGGTGATGATAAGAAAGTGGTTGATGAAAAGGAGCACACATATTTTGGATCATCTGATTCTTATAGCAGCAAGAGTAAAAAAAAATCTGGTGCTGGAGACAAGCAACAAGATCACTATGCATTATTGGGATTGGGGCATCTAAGGTATCTTGCTACGGAGGATCAAATTCGTAAAAGCTATCGTGAAACTGCCTTGAGGTATCATCCTGATAAACAGGCTGCTCTTTTACTTGCGGAGGAGACTGAAGCTGCAAAACAGGCAAAGAAGGATGAAATAGAAAGTCATTTTAAGGCAATCCAGGAAGCATATGAGGTGTTGATTGATCCTGTGAAGAGAAGAATTTATGATTCCACTGATGAGTTTGATGATGACATTCCCACTGACTGTGCCCCGCAAGACTTCTTCAAAGTTTTTGGTCCTGCTTTTATGAGGAATGGACGGTGGTCAGTTAATCAACAAGTTCCATCTTTAGGAGATGACAATACTCCACTAAAAGAAGTTGATAAATTCTATGATTTCTGGTACACCTTTAAAAGCTGGAGGGAGTTTCCTCATGCTGATGAGTTTGATCTTGAGCAAGCTGAATCTCGAGACCATAGAAGGTGGATGGAAAGGCAAAATGCAAAGCTTTCTGAAAAAGCTAGGAAGGAAGAATATGCACGGGTACGTACTCTTGTTGATAATGCTTACAAGAGAGACCCAAGGATACTGAGGAGAAAGGAGGAGGAAAAAGCTGAGAAGCAAAGGAAAAAGGAGGCCAAGATTATGGCAAAAAGATTGCAGGAAGAAGAAGCTGCCAGAATTGCAGAAGAGGAGAGGCTGCAGAAGGAAGAGGAAGAGAAACGAGCTGCTGAAGCTGCTTTACAACAAAAGAAGGTGAAGGAGAAAGAGAAAAAGCTCTTGCGCAAAGAGCGAACTCGTCTTCGAACACTTTCAGCACCTATCTTGTCACCGCAACTGCATGACATATCCGAGGATGATGTAGAAAGTCTTTGCATGTCACTTGATATTGAAAAGCTGAGGAGTTTGTGCCAAAAAATGGAAGGCAAACCTGTGTTAGAGCAAGCAGAAGTTCTGAGAGATGCTCGTGGCTCTAAGAATGATATGAATGATAAGAAAGATGAGAAAAATGATAAACATGATGGTTCTGTAAGGGCTAATGGTAGTGTCTTGCTAAGCAACAACATTGAGAAGAAGGAGAAACCTTGGAGTAAAGAAGAGATCGAGCTATTGAGAAAAGGAATGCAGAAATATCCTAAAGGAACTTCCCGAAGGTGGGAGGTCATTTCAGAATACATTGGTACGAGAAGATCCGTAGAAGAAATTATGAAAGCAACCAAAACAGTTCTGCTCCAGAAGCCTGATTCTTCCAAATCATTTGATGCATTCCTTGAGAAAAGGAAACCTGCACAATCAATTGCATCCCCTCTCACAACCCGAGAAGAATTAATGGGGGAATCAACTCCTGGCAGGCCTGAAAATAATGCTACCTCATCAACAAATAACTTGGAAGGCTCTCATGACAATCCAAATTCTGCTGGGCCAGCTACTGCAAGTGGAGTTTCCTCTAGTTCAGAGCAAGATGTGTGGTCTGCTGTACAAGAAAGAGCACTGGTCCAGGCTCTAAAAGCCTTCCCCAAGGATACTAGCCAGAGATGGGAACGAGTTGCAGCTGCTGTTCCAGGGAAGACTGTAAATCAATGCAAGAAAAAATTTACAATGTTGAAGGAGAACTTCAGGAACAAGAAAAGTGCAGTTTAA 1938 0.4185 MVLRTNLQLIAYSQEIVDGQPILVSSNCLPIKALNFEPAGHAFHSAALNFLGVEDVNEDGDDKKVVDEKEHTYFGSSDSYSSKSKKKSGAGDKQQDHYALLGLGHLRYLATEDQIRKSYRETALRYHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDPVKRRIYDSTDEFDDDIPTDCAPQDFFKVFGPAFMRNGRWSVNQQVPSLGDDNTPLKEVDKFYDFWYTFKSWREFPHADEFDLEQAESRDHRRWMERQNAKLSEKARKEEYARVRTLVDNAYKRDPRILRRKEEEKAEKQRKKEAKIMAKRLQEEEAARIAEEERLQKEEEEKRAAEAALQQKKVKEKEKKLLRKERTRLRTLSAPILSPQLHDISEDDVESLCMSLDIEKLRSLCQKMEGKPVLEQAEVLRDARGSKNDMNDKKDEKNDKHDGSVRANGSVLLSNNIEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTRRSVEEIMKATKTVLLQKPDSSKSFDAFLEKRKPAQSIASPLTTREELMGESTPGRPENNATSSTNNLEGSHDNPNSAGPATASGVSSSSEQDVWSAVQERALVQALKAFPKDTSQRWERVAAAVPGKTVNQCKKKFTMLKENFRNKKSAV 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0468 645 Gene3D - 455 512 - -
Dere10g0468 645 SMART sant 458 511 IPR001005 -
Dere10g0468 645 SMART sant 585 637 IPR001005 -
Dere10g0468 645 ProSiteProfiles Myb-like domain profile. 454 509 IPR001005 -
Dere10g0468 645 MobiDBLite consensus disorder prediction 414 442 - -
Dere10g0468 645 Pfam Myb-like DNA-binding domain 588 634 IPR001005 -
Dere10g0468 645 Pfam Myb-like DNA-binding domain 460 499 IPR001005 -
Dere10g0468 645 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 9 644 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Dere10g0468 645 Gene3D - 579 645 - -
Dere10g0468 645 Coils Coil 418 438 - -
Dere10g0468 645 SMART dnaj_3 95 170 IPR001623 -
Dere10g0468 645 Coils Coil 296 365 - -
Dere10g0468 645 PRINTS DnaJ domain signature 101 119 IPR001623 -
Dere10g0468 645 PRINTS DnaJ domain signature 150 170 IPR001623 -
Dere10g0468 645 PRINTS DnaJ domain signature 119 134 IPR001623 -
Dere10g0468 645 CDD SANT 461 503 IPR001005 -
Dere10g0468 645 SUPERFAMILY Homeodomain-like 587 642 IPR009057 -
Dere10g0468 645 Gene3D DnaJ domain 92 211 IPR036869 -
Dere10g0468 645 ProSiteProfiles dnaJ domain profile. 96 178 IPR001623 -
Dere10g0468 645 MobiDBLite consensus disorder prediction 530 586 - -
Dere10g0468 645 Pfam DnaJ domain 96 175 IPR001623 -
Dere10g0468 645 CDD SANT 589 635 IPR001005 -
Dere10g0468 645 ProSiteProfiles Myb-like domain profile. 581 635 IPR001005 -
Dere10g0468 645 ProSitePatterns Nt-dnaJ domain signature. 155 174 IPR018253 -
Dere10g0468 645 SUPERFAMILY Homeodomain-like 457 501 IPR009057 -
Dere10g0468 645 MobiDBLite consensus disorder prediction 549 586 - -
Dere10g0468 645 FunFam Myb family transcription factor 583 643 - -
Dere10g0468 645 ProSiteProfiles SANT domain profile. 584 639 IPR017884 -
Dere10g0468 645 CDD DnaJ 96 167 IPR001623 -
Dere10g0468 645 SUPERFAMILY Chaperone J-domain 65 174 IPR036869 -
Dere10g0468 645 MobiDBLite consensus disorder prediction 414 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0468 Dere-ChrDere10 9014189 9016126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0468 97 296 C2H2 Transcription Factor Family AT1G74250 29.289 1.79e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere10g0468 DnaJ 9.6e-18 CL0392