Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0461 ATGGCTCTGTGGAGAGCTCGCGCAGCTTCTTTGGCGTTCTCAAGTATCAGTAACCTCAAGCTTCTCAAACCCTTCTCATTCCTCAGCAATAGTCTCGTCGATGCTTCTCGCAATTTCTCTTCCGATGCTGCAAAGTCATATGCTCGTAATCCACGTGAGAGTATGATGAATCAAATGATGTATACTGACATAAATGCACAAATCGGGAGTTGCATGCCCCTCGCTGCTATGCGAATTGGGACAATCATTCACAACATTGAGTTGAACCCTGGGCAAGGTGGCAAACTTGTCAGGGCAGCTGGAACTAGAGCAAAGATATTGAAAGAGCCTGCATCAAGATATTGCTTAGTCCAACTCCCTTCAGGTGTGAAAAAGTTGATTGATTCTCGTTGCAGAGCCACAATTGGTACTGTGTCTAATCCAACCCACGGAGATCGGAAGCTTAGGAAGGCTGGACAGAGCAGGTGGCTCGGTCGAAGGCCGGTAGTTCGAGGAGTGGCCATGAATCCTGTAGACCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGAAAATATGGGAGAGTATCTGTTTCTCCTTGGGGCAAGCCTACTAAGGGTGGGTATAAGACTGGCCCACTAAAGCGCAGAAGGTAG 642 0.4829 MALWRARAASLAFSSISNLKLLKPFSFLSNSLVDASRNFSSDAAKSYARNPRESMMNQMMYTDINAQIGSCMPLAAMRIGTIIHNIELNPGQGGKLVRAAGTRAKILKEPASRYCLVQLPSGVKKLIDSRCRATIGTVSNPTHGDRKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKYGRVSVSPWGKPTKGGYKTGPLKRRR 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0461 213 FunFam 60S ribosomal protein L2, mitochondrial 62 138 - -
Dere10g0461 213 SUPERFAMILY Translation proteins SH3-like domain 68 203 IPR008991 -
Dere10g0461 213 Gene3D Ribosomal protein L2, domain 3 139 213 IPR014726 -
Dere10g0461 213 PANTHER RIBOSOMAL PROTEIN L2 59 212 IPR002171 GO:0003735|GO:0005840|GO:0006412
Dere10g0461 213 FunFam 50S ribosomal protein L2 139 213 - -
Dere10g0461 213 MobiDBLite consensus disorder prediction 167 213 - -
Dere10g0461 213 Pfam Ribosomal Proteins L2, C-terminal domain 68 197 IPR022669 GO:0003735|GO:0005840|GO:0006412
Dere10g0461 213 Gene3D - 57 138 IPR014722 -
Dere10g0461 213 SMART Ribosomal_L2_C_2 66 199 IPR022669 GO:0003735|GO:0005840|GO:0006412
Dere10g0461 213 ProSitePatterns Ribosomal protein L2 signature. 161 172 IPR022671 GO:0003735|GO:0005840|GO:0006412
Dere10g0461 213 NCBIfam 50S ribosomal protein L2 42 208 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0461 Dere-ChrDere10 8947755 8949310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0461 58 178 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.411 4.03e-24 94.7