Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0425 ATGTCTGGAATCAACATCAACTCGCCGGCGGCTTTCGAGCAAGAGGTGGTCTATAGGGAGTGCAGGCACAACCATGCAGCCTCCCTTGGCCACGTCGCTTACGACGGTTGTCGCGAGTTTCTCAAGCCCGACATTGGGGACGTTGCGGACGGCAACCCCAAGGAGTCCATGCTCTGTGTTGCATGTAGCTGCCACCGCAACTTCCACCGCAAACACATCGTCTACAACCCCATCATGACGGCTCCCACCACCATCCCCCAGACCCACCCCCAGCCAGACTTTCCGCCGGCAGCAGGAGAAGCCGGACCATCTGCGTCAGTTGCCCGTGTTGTCCAGTCCATCAACCCGAGGACGACAACGACTGCCGGAAACAACAATAGTAAGGAGGGAACAGTAGAGGTGCCGCCGCCACCGCCGGAGGGTAGGAAGAAAAGAACTATGTTCACGGTAGAGCAGCGCAGCCGAATGGTGTGGTTCGCTGAGAGGTTGGGGTGGAGACCTCAGAAAGCTGACAAGGAAGAGATCCAACGCTTCTGCTTGGACATGGGAATCAGCCGCAGAATGTTCCTTGTGTGGCTTAGCAACAACCGGCGAAGGGTGGTTAAGGACACCACCCCCACCGCTGCCGCCACCGCCGTCTAA 642 0.5841 MSGININSPAAFEQEVVYRECRHNHAASLGHVAYDGCREFLKPDIGDVADGNPKESMLCVACSCHRNFHRKHIVYNPIMTAPTTIPQTHPQPDFPPAAGEAGPSASVARVVQSINPRTTTTAGNNNSKEGTVEVPPPPPEGRKKRTMFTVEQRSRMVWFAERLGWRPQKADKEEIQRFCLDMGISRRMFLVWLSNNRRRVVKDTTPTAAATAV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0425 213 MobiDBLite consensus disorder prediction 117 144 - -
Dere10g0425 213 NCBIfam homeobox domain, ZF-HD class 142 197 IPR006455 -
Dere10g0425 213 ProSiteProfiles 'Homeobox' domain profile. 139 203 IPR001356 GO:0003677
Dere10g0425 213 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 198 - -
Dere10g0425 213 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 72 IPR006456 -
Dere10g0425 213 MobiDBLite consensus disorder prediction 117 131 - -
Dere10g0425 213 Pfam ZF-HD protein dimerisation region 16 73 IPR006456 -
Dere10g0425 213 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 72 IPR006456 -
Dere10g0425 213 SUPERFAMILY Homeodomain-like 133 200 IPR009057 -
Dere10g0425 213 Gene3D - 125 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0425 Dere-ChrDere10 7438002 7438643 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0425 18 202 ZF-HD Transcription Factor Family AT2G18350 33.508 2.24e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere10g0425 ZF-HD_dimer 9.9e-21 No_clan