Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0419 ATGCCGCCTCTAGCGAAGCCAACGAAAACTACAAAACCTTCTGGGGGGTCTTATGGTTCTGCGTCGTCTGATCGCCCTTTTGCTTGTCCTTATGAAGGGTGTGAAAAAGCCTATATTCATGAATACAAGCTTAAACTTCATTTGAAGAGGGTGCATCCTGGGCATGCTGACGAAAATATTGCTGAGAATGCTCAGGCTAATAATAATGCTGACAATGAAATGGATGAAGCAAGCGACCAAGATGCCTATGTTGGGAAACGATCAAATGGTAGAAGTCAGAAGCAAAGTAAGCCCAAACCAAACTTGACGTTGCCTCCTTCAAAAAGTGCACGACTGCTGGACCAGGGTAATACTAGAGTATGCTCAGTTTTTATCCATGGCTACTCCTACAACAAGATGTGGTTATTTGAAAACTCTGACTACTCCAGTTCTTTCCAACCCAATCTTGTGGGTTAA 456 0.4342 MPPLAKPTKTTKPSGGSYGSASSDRPFACPYEGCEKAYIHEYKLKLHLKRVHPGHADENIAENAQANNNADNEMDEASDQDAYVGKRSNGRSQKQSKPKPNLTLPPSKSARLLDQGNTRVCSVFIHGYSYNKMWLFENSDYSSSFQPNLVG 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0419 151 MobiDBLite consensus disorder prediction 1 26 - -
Dere10g0419 151 FunFam Zinc finger transcription factor YY1 2 70 - -
Dere10g0419 151 MobiDBLite consensus disorder prediction 85 111 - -
Dere10g0419 151 ProSitePatterns Zinc finger C2H2 type domain signature. 29 52 IPR013087 -
Dere10g0419 151 Coils Coil 56 80 - -
Dere10g0419 151 MobiDBLite consensus disorder prediction 57 111 - -
Dere10g0419 151 Gene3D Classic Zinc Finger 5 72 - -
Dere10g0419 151 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 57 IPR013087 -
Dere10g0419 151 SUPERFAMILY beta-beta-alpha zinc fingers 22 50 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0419 Dere-ChrDere10 7386317 7387078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0419 2 111 C2H2 Transcription Factor Family AT4G06634 53.448 2.43e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere10g0419 None None None