Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0417 ATGCTCTGTGTTGCATGCGGCTGCCACCACAACTTCCACCGCAAACACATCGTCTACAACCCCATCATGACGGCTCCCACCACCATCCCCCAGACCCACCCCCAGCCAGACTTTCCGCCGGCAGCAGGAGAAGCCGGACCATCTGCGTCAGTTGCCCGTGTTGTCCAGTCCATCAACCTGGGGACGACAAGGACTGCCCGAAACAACAATAGTAAGGAGGGACCAGTAGAGGTGCCGCCACCACCGCCGGAGTGTAGGAAGAAAAGAACTATTTTCACGGTAGAGCAGCGCAGCCGAATGGTGCGGTTCGCTGAGAGGTTGGGGTGGAGACCTCAGAAAGCTGACAAGGAAGAGATCCAACGCTTCTGCTTGGACATGGGAATCAGCCGCAGAATGTTCCTTGTGTGGCTTAGCAACAACCGGCGAAGGGTGGTTAAGGACACCACCCCCACCGCTGCCGCCACCGCCGTCTAA 474 0.5823 MLCVACGCHHNFHRKHIVYNPIMTAPTTIPQTHPQPDFPPAAGEAGPSASVARVVQSINLGTTRTARNNNSKEGPVEVPPPPPECRKKRTIFTVEQRSRMVRFAERLGWRPQKADKEEIQRFCLDMGISRRMFLVWLSNNRRRVVKDTTPTAAATAV 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0417 157 MobiDBLite consensus disorder prediction 62 86 - -
Dere10g0417 157 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 142 - -
Dere10g0417 157 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
Dere10g0417 157 ProSiteProfiles 'Homeobox' domain profile. 83 147 IPR001356 GO:0003677
Dere10g0417 157 NCBIfam homeobox domain, ZF-HD class 86 141 IPR006455 -
Dere10g0417 157 Gene3D - 67 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0417 Dere-ChrDere10 7257638 7258111 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0417 1 144 ZF-HD Transcription Factor Family AT4G24660 33.333 6.35e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere10g0417 ZF-HD_dimer 0.00023 No_clan