Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0412 ATGTCTGGAATCAACATCAACTCGGTGGCGGCTTTCGAGCAAGAGGTGGTCTATAGGGAGTGCAGGCACAACCATGCAGCCTCCCTTGGCCACGTCGCCTACGACGGTTGTCGCGAGTTTCGCAAGCCCGACATTGGGGACGTTGCGGACGGCAACCCCAAGGACGCCATGCTCTGTGTTGCATGTGGCTGCCACCGCAATTTCCACCGCAAACACATCGTCTACAACCCCATCATGACGGCTCCCACCACCATCCCCCAGACCCACCCCCAGCCAGACTTTCCGCCGGCAGCAGGAGAAGCCGGACCATCTGCGTCAGTTGCCCGTGTTGTCCAGCCCATCAACCCGGGGACGACAAGGACTGCCCGAAACAACAATAGTAAGGAGGGACCAGTAGAGGTGCCGCCACCACCGCCGGAGGGTAGGAAGAAAAGAACTATGTTCACGGTAGAGCAGCGCAGCCGAATGGTGCGGTTCGCTGAGAGGTTGGGGTGA 495 0.598 MSGININSVAAFEQEVVYRECRHNHAASLGHVAYDGCREFRKPDIGDVADGNPKDAMLCVACGCHRNFHRKHIVYNPIMTAPTTIPQTHPQPDFPPAAGEAGPSASVARVVQPINPGTTRTARNNNSKEGPVEVPPPPPEGRKKRTMFTVEQRSRMVRFAERLG 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0412 164 Pfam ZF-HD protein dimerisation region 16 73 IPR006456 -
Dere10g0412 164 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 164 - -
Dere10g0412 164 MobiDBLite consensus disorder prediction 115 146 - -
Dere10g0412 164 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 72 IPR006456 -
Dere10g0412 164 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0412 Dere-ChrDere10 7082532 7083026 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0412 16 164 ZF-HD Transcription Factor Family AT1G14440 35.000 3.29e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere10g0412 ZF-HD_dimer 1.9e-20 No_clan