Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0407 ATGGTAACCATTCGTGTAGATGAGATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAGATTGTAAATACTGGTACCGTACTTCAAGTAGGTGATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAAGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTTTGAATTTGGAATCAAATAATGTTGGTGTTGTATTAATGGGTGACGATTTGATGATACAAAAGGGCAGTTCTGTAAAAGCAACAGGAAGAATTGCTCAGATACCAATAAGTGAGGCTTATTTGGGTCGTGTTATAAATGCCCTGGCTAAACCTATTGATGGTCGAGGAGAAATTTCAGCTTCTGAATCTCGGTTAATTGAATCTCCCGCTCCCGGTATTATTTCGAGACGTTCCGTATATGAGCCTCTTCAAACAGGACTTATTGCTATTGATTCGATGATCCCTATAGGGCGTGGTCAGCGAGAATTAATTATTAGGGACAGACAAACCAGTAAAACAGCAGTAGCCACAGATACCATTCTCAATCAACAAGGACAAAATGTAATATGTGTTTATCTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCCAGTGGTGACTACTTTACAAGAAAGGGGAGTAATGGAATATACTATTGTAGTAGCTGAAATAGCGGATTCTCCAGCTACATTATAA 708 0.3828 MVTIRVDEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMASELVEFEEGTIGIALNLESNNVGVVLMGDDLMIQKGSSVKATGRIAQIPISEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIRDRQTSKTAVATDTILNQQGQNVICVYLAIGQKASSVAPVVTTLQERGVMEYTIVVAEIADSPATL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0407 235 Gene3D - 95 235 IPR027417 -
Dere10g0407 235 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 95 IPR036121 GO:0046034|GO:1902600
Dere10g0407 235 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 150 233 IPR000194 GO:0005524
Dere10g0407 235 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 93 IPR004100 GO:0046034|GO:1902600
Dere10g0407 235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 234 IPR027417 -
Dere10g0407 235 FunFam ATP synthase subunit alpha, mitochondrial 95 235 - -
Dere10g0407 235 Gene3D - 3 94 IPR023366 -
Dere10g0407 235 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 2 235 IPR005294 GO:0015986|GO:0045261|GO:0046933
Dere10g0407 235 FunFam ATP synthase subunit alpha 1 94 - -
Dere10g0407 235 CDD ATP-synt_F1_alpha_N 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0407 Dere-ChrDere10 7064977 7065684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0407 75 232 Primary Pumps ATPases(2) AT4G38510 26.437 2.27e-08 52.0