Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0395 ATGTCTGGAATCAACATCAACTCGGCGGCGGCTTTCGAGCAAGAGGTGGTCTATAGGGAGTGCAGGCACAACCATGCAGCCTCCCTTGGCCACGTCGCCTACGACGGTTGTCGCGAGTTTCGCAAGCCCGACATTGGGGACGTTGCGGACGGCAACCCCAAGGACGCCATGCTCTGTGTTGCATGTGGCTGCCACCGCAACTTCCACCGCAAACACATCGTCTACAACCCCATCATGACGGCTCCCACCACCATCCCCCAGACCCACCCCCAGCCAAACTTTCCGCCGGCAGCAGGAGAAGCCGGACCATCTGCGTCAGTTGCCCGTGTTATCCAGTGCATCAACCCGGGGACGACAAGGACTGCCCGAAACAACAATAGTAAGGAGGGACCAGTAGAGGTGCCGCCACCACCGCCGGAGGGTAGGAAGAAAAGAACTATGTTCACGGTAGAGCAGCGCAGCCGAATGGAGCGGTTCGCTGAGAGGTTGGGGTGGAGACCTCAGAAAGCTGACAAGGAAGAGATCCAACGCTTCTGCTTGGACATGGGAATCAGCCGCAGAATGTTCCTTGTGTGGCTTAGCAACAACCGGCGAAGGGTGGTTAAGGACACCACCCCCACCGCTGCCGCCACCGCCGTCTAA 642 0.5903 MSGININSAAAFEQEVVYRECRHNHAASLGHVAYDGCREFRKPDIGDVADGNPKDAMLCVACGCHRNFHRKHIVYNPIMTAPTTIPQTHPQPNFPPAAGEAGPSASVARVIQCINPGTTRTARNNNSKEGPVEVPPPPPEGRKKRTMFTVEQRSRMERFAERLGWRPQKADKEEIQRFCLDMGISRRMFLVWLSNNRRRVVKDTTPTAAATAV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0395 213 SUPERFAMILY Homeodomain-like 134 200 IPR009057 -
Dere10g0395 213 Gene3D - 133 202 - -
Dere10g0395 213 MobiDBLite consensus disorder prediction 118 144 - -
Dere10g0395 213 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 198 - -
Dere10g0395 213 NCBIfam homeobox domain, ZF-HD class 142 197 IPR006455 -
Dere10g0395 213 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 72 IPR006456 -
Dere10g0395 213 Pfam ZF-HD protein dimerisation region 16 73 IPR006456 -
Dere10g0395 213 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 72 IPR006456 -
Dere10g0395 213 ProSiteProfiles 'Homeobox' domain profile. 139 203 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0395 Dere-ChrDere10 6902025 6902666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0395 15 200 ZF-HD Transcription Factor Family AT4G24660 35.979 7.11e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere10g0395 ZF-HD_dimer 3.2e-20 No_clan