Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0394 ATGGAGACTCAGTTCAATCACAGTCTCTTCGACAGGCGCTCCATCTTCAAGTCTAAGACTCCCGTTGTTAAATGGGTCAAAGAATGGGTTCCCCAGGATGTTGTAGCCACTGGTGGGAAGTGCATGCTTTTCAGATGGGTAAGAGAGGATTCCTTAAAGGCCTTGAAGGATAAGGAAAAAGAACCATCAGTGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTATGCAGCTATGAAGGCTGTGGAAAGACTTTTATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGTCACTATGAGGGATGCGGAAAGAAATTTCTGGACAGTTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTCGATTTCAACCTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATTGCATCACATCACGAAAAGAATGGGTCTGTGGATGTGAGTGTGACGAAGTATATGCCGCCTCCAGAGAAGCCAACGAAAACTACAAAACCTTCTGGGGGGGCTTATGGTTCTGCGTCATCTGATCGCCCTTTTGCTTGTCCTTATGAAGGGTGTGAAAAAGCCTATATTCATGAATACAAGCTTAAACTTCATTTGAAGAGGGAGCATCCTGGGCATGCTGACGAAAATATTGCTGAGAATGCTCAGGCTAATAATAATGCTGACAATGAAATGGATGAAGCAAGCGACCAAGATGCGTATGGTGGGAAACGATCAAATGGCAGAAGTCAGAAGCAAAGTAAGCCCAAACCAAACTTGAAGTTGCCTCCTTCAAAAAGTGCACGACGTAAAGCATCAGCTCCTTCTTCTGCTACTACTTTGAAGGTGATTAAGAAACCCTGGCCAGCGAAGGAAGAAACTTATGAGGAAGAAGACAGCGAGGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGGTATGCAGGAAACAACGAGGATGATGATGAGGAGACGGAATATGAAGACTGA 1134 0.4418 METQFNHSLFDRRSIFKSKTPVVKWVKEWVPQDVVATGGKCMLFRWVREDSLKALKDKEKEPSVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNGSVDVSVTKYMPPPEKPTKTTKPSGGAYGSASSDRPFACPYEGCEKAYIHEYKLKLHLKREHPGHADENIAENAQANNNADNEMDEASDQDAYGGKRSNGRSQKQSKPKPNLKLPPSKSARRKASAPSSATTLKVIKKPWPAKEETYEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0394 377 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Dere10g0394 377 SUPERFAMILY beta-beta-alpha zinc fingers 226 254 IPR036236 -
Dere10g0394 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Dere10g0394 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Dere10g0394 377 FunFam zinc finger transcription factor YY1 77 102 - -
Dere10g0394 377 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Dere10g0394 377 Gene3D Classic Zinc Finger 77 102 - -
Dere10g0394 377 Gene3D Classic Zinc Finger 134 161 - -
Dere10g0394 377 MobiDBLite consensus disorder prediction 289 306 - -
Dere10g0394 377 MobiDBLite consensus disorder prediction 275 377 - -
Dere10g0394 377 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Dere10g0394 377 FunFam zinc finger transcription factor YY1 163 194 - -
Dere10g0394 377 FunFam Zinc finger transcription factor YY1 206 273 - -
Dere10g0394 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 261 IPR013087 -
Dere10g0394 377 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Dere10g0394 377 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Dere10g0394 377 Coils Coil 260 284 - -
Dere10g0394 377 Gene3D Classic Zinc Finger 163 195 - -
Dere10g0394 377 Gene3D Classic Zinc Finger 103 133 - -
Dere10g0394 377 FunFam Zinc finger protein 410 134 161 - -
Dere10g0394 377 MobiDBLite consensus disorder prediction 340 354 - -
Dere10g0394 377 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 352 - -
Dere10g0394 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Dere10g0394 377 ProSitePatterns Zinc finger C2H2 type domain signature. 233 256 IPR013087 -
Dere10g0394 377 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Dere10g0394 377 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Dere10g0394 377 MobiDBLite consensus disorder prediction 192 228 - -
Dere10g0394 377 Gene3D Classic Zinc Finger 208 275 - -
Dere10g0394 377 FunFam Putative zinc finger protein 143 103 133 - -
Dere10g0394 377 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Dere10g0394 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Dere10g0394 377 SMART c2h2final6 136 160 IPR013087 -
Dere10g0394 377 SMART c2h2final6 166 190 IPR013087 -
Dere10g0394 377 SMART c2h2final6 231 256 IPR013087 -
Dere10g0394 377 SMART c2h2final6 77 101 IPR013087 -
Dere10g0394 377 SMART c2h2final6 106 130 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0394 Dere-ChrDere10 6875346 6880264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0394 10 363 C2H2 Transcription Factor Family AT4G06634 64.228 1.46e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere10g0394 zf-C2H2 0.009 CL0361