Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0393 ATGGAACTGTCAGATTTGCAAAACAATTCCAACAAGCAGATTAGAAGCACTAACAACACACCCACTCATCACCACCATCACCACCTTCATCATCTCCAACACCAGCAGAAGCAGCTACCTTCGACGACATCGTCCTCGCAGGTTGTGGTCCCTAAATTCGATGGCAGGCCATCATCTTCATCATCTTCTTCATTCATGGGCTCTATCTCCATCCAAGCTGGCCTATCTTCTTCTTCTTCGTCTTCGTCTTTGTCTCTGTCTTCGTCGTCTTCTTCTGCTGCTGCTGCTGCTTCCTTGTCTAACAATTCTTCTTCGTCATCTTCCCTACCTGCTTCTACTTCCTCCGATGCTCCTCACCTCATTGATGCCTCCCTAGCCATCGCTACTAGATCTGAGGCCCACCCATCTACAAGACCCGGAGCTGTGGTCGATTCCGCCAAGAAAACGCAAATTCAGCAACAATTGTCGATTTCCACGGCGGCGACGGCCACTGCGAACCCGCCTAAGCGGTCCACGAAGGATAGGCACACCAAGGTGGATGGACGGGGCCGGAGAATTCGAATGCCGGCCGCGTGTGCGGCTAGGGTTTTTCAATTGACCAGGGAATTGGGGCACAAGTCGGACGGGGAGACAATCGAGTGGCTACTGCAGCAGGCGGAGCCGGCGATCATCGCCGCAACCGGCACCGGCACGATTCCAGCAAACTTCTCGACTCTTAACGTGTCGATCCGGAGCAGCGGGTCGACGATCTCGGCTCCGCCGTCGAAGTCCGCTCCGCATACGTTTCACGGCGCCTTGGCTCTCGCTGCTCATGGTCACCACCATCATCATCCTTACGAAGAAGCTTTCCAGCACACTGCTCTGTTAGGGCTTCACCCTTACCACCACCACCACCAACAGCAACAGAATCAGCCTCATCTACTGACCGCCAACCAGATTGCAGAAGCGATTCCAGCCGGCGGAGGAGGTGGCGGGGAGAGTGGAGGTGACACGCCTGAGAACTATTTGAGAAAACGCTTCAGAGAAGATCTGTTCAAAGAAGATAACCAATCACAAAACGAGAGTGGGGGAAGCTCGCCGAAGTCATTCAAGGCCAATTTACAACAAATCCCGAAGCAACCGGAAGCATCTGGATCTTCGGGTCTTCTTCGTCCTCCGAACATACTCCCTGCCGCCGCCGCTATGTGGGCGGTGGCACCAGCTCAGACGAGTGGCGCCGGCAGCACAATCTGGATGCTACCTGTGAACGCCAGCGGGCCCGGGTCAGGTCCGGCTCCGGAGACTCAAATGTGGCAGTTTCCGACCGCGCAAGCTGGTTCTGGGAATAATACCTTACAAGCGCCTCTGCATTTCATGCCTAGGTTCAATCTTCCGGGAAGCCTTGAATTTCAAGGAGGTGGTGGGAGAGGGGGTTCTCTGCAACTGGGTTCCATGATAATGCCTCATCAACATCAGCAACCATCTCAGCATCTTGGGTTGGGGATGTCTGAGTCTAATCTGGGGATGTTGGCTGCTCTAAATGCCTATTCTAGAGCTGGTTTGAATATGAATTCTGAGCAAAATCACCCACTGGAGCACCATCATCATCATCATCAACAACAACAGCATCAGCAACAAGCAACTGATAGTGGAGAAGAAGGTCCTGATAGTTCCCAATGA 1659 0.5335 MELSDLQNNSNKQIRSTNNTPTHHHHHHLHHLQHQQKQLPSTTSSSQVVVPKFDGRPSSSSSSSFMGSISIQAGLSSSSSSSSLSLSSSSSSAAAAASLSNNSSSSSSLPASTSSDAPHLIDASLAIATRSEAHPSTRPGAVVDSAKKTQIQQQLSISTAATATANPPKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSIRSSGSTISAPPSKSAPHTFHGALALAAHGHHHHHPYEEAFQHTALLGLHPYHHHHQQQQNQPHLLTANQIAEAIPAGGGGGGESGGDTPENYLRKRFREDLFKEDNQSQNESGGSSPKSFKANLQQIPKQPEASGSSGLLRPPNILPAAAAMWAVAPAQTSGAGSTIWMLPVNASGPGSGPAPETQMWQFPTAQAGSGNNTLQAPLHFMPRFNLPGSLEFQGGGGRGGSLQLGSMIMPHQHQQPSQHLGLGMSESNLGMLAALNAYSRAGLNMNSEQNHPLEHHHHHHQQQQHQQQATDSGEEGPDSSQ 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0393 552 Pfam TCP family transcription factor 171 294 IPR017887 -
Dere10g0393 552 MobiDBLite consensus disorder prediction 131 180 - -
Dere10g0393 552 MobiDBLite consensus disorder prediction 536 552 - -
Dere10g0393 552 MobiDBLite consensus disorder prediction 19 34 - -
Dere10g0393 552 MobiDBLite consensus disorder prediction 146 168 - -
Dere10g0393 552 MobiDBLite consensus disorder prediction 1 66 - -
Dere10g0393 552 MobiDBLite consensus disorder prediction 346 366 - -
Dere10g0393 552 MobiDBLite consensus disorder prediction 35 66 - -
Dere10g0393 552 ProSiteProfiles TCP domain profile. 172 226 IPR017887 -
Dere10g0393 552 MobiDBLite consensus disorder prediction 1 18 - -
Dere10g0393 552 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 91 511 IPR005333 GO:0003700
Dere10g0393 552 MobiDBLite consensus disorder prediction 518 552 - -
Dere10g0393 552 MobiDBLite consensus disorder prediction 350 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0393 Dere-ChrDere10 6862404 6864062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0393 169 499 TCP Transcription Factor Family AT1G35560 45.858 2.53e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Dere10g0393 TCP 1e-37 No_clan