Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0380 ATGGGAATCTCCATTGAGATTTGCATTCCGAAAAGAGAAGTAATAGTAATAGTGATAGTGTTGTGGAATGCCTTGGCCTTCTTCCCCCATCCTATTCTTGCCACCTCCACAAGCAACAAAGCAACAAATAATTCCTCCTCCCTTCACAACACATTCATGGAAGACAACTTTAAAGAGGAGGAAGATGCTTTGCGCCAGAGCCACTGGTGGAATAGCAGTGGCCTCGATTTCTCCAAACGTTGTCAATGGGATGGTATATTATGCGCATATGGAAGAATTCTAGCAATTGAAAGACCACACTTGTCTGCTTCGCGACCTCGACTTGATAATATGAATTGGACTGCCTTCCCCAATTTAGAAACCATTGACCTTGAAGGAATGGGATTGGAGGGAAACATACCAACCAAGATAGCAGGTCTTCAAAAGCTCACTGATCTAGATTTGTCTAATAACAGCCTGACGGGTGAGTTACCCACTACTCTCGCCAATCTCACTCGACTTCAGTATTTTTCTATTTCTAAAAACTTTATTAGTGGTGTGGTACCTTGGTGCTTGAGTCATATGAACAGTCTCATATTTATCGACTTATCTACTAATAATCTTTCTGGTCTAATTCCTTCAAGCATAGGAAACTTGTCCAATTTGGAAACTTTGGATTTAAGTGCCAATAATCTCCATGGCCCAATTCTTACTTCTCTTATGGGTCATATGAACGGTCTTAAATATATCAACCTATCCACTAATAATTTTTCTGGGCAAATTCCTTCAAATATAGGAAATTTGTCCAATTTGTGGCATTTAGATCTTGGTATCAATAATCTTCATGGCCCAATTCCTATCTCTTTGTATAAACTAACTAAGTTGACACGTATCCACCTCCGGTCAAATCACATAAGTGGCTTCATACCACCAGAAATTGGAGATTTTGAATATCTACGAAGTCTAGATCTATCGAATAATAAAATATTTGGTAGTTTGCCGCTTGAAATTGGACACTTCCTTAATCTTGAAACTCTAGACCTCAGTCATAATATGTTTATTGGAGTAATTCCATTTAGTTTGGGCAATTTATTATCTTGCTATAGCTTGGATTTAAGCTTTAATAGCCTTACTGGGAATATACCTGAAGAGCTTGGTAGGCTAATGCAGACAAACATCAACTTGTCATACAACAATCTCAGTGGCTACGTCCCAAGAGAAATTTTATGTATGTTCCCTCATGACATATTAAATGGTAATACGGAGTTAATTGGTCTACATAAGGATCTATCTTGTTCTAATGATTTTTCAAATGGCACCTTTGTTCCTGCTAAAAAGTCAAAACATTACTTGAGGGTCATTCTTCCCTTGACAATTTTTCTTGGCATCTTGTTTGTTGTGGGTTTGATGGAGGCCTTCGTCTCAGACTTTGGCACTGCTAGAATCCTTGATCCGGATTCCTCCAATCAAACTGTTCTAGTTGGTACATATGGTTATATTGCTCCAGAACTTGCATACACCTTGATAGTGACTGAAAAATGCGATGTTTATAGTTTTGGAGTAGTGGCATTAGAAACAATAATGGGAAGACATCCTGGAGATTTAATCTCATCTTTGTCAAAGACCAGTAATGAGAGCATACTATTAAAAGATGCCTTAGATTCACGTCTCCCTCTTCCATTGCCGAAAGATGCACAAGATGTGATTCTTACGGTCAAAGTAGCATTAGCATGCTTGCATCCTACACCCAAATCTCGGCCATCAATGCAGCAAGTCACTAGAGAGCTTTCAGTCTCCAAGTTGCCATTGCATATTCCTTTCAATAATATTTCACTCCAACATTTACTAAATTAA 1833 0.3846 MGISIEICIPKREVIVIVIVLWNALAFFPHPILATSTSNKATNNSSSLHNTFMEDNFKEEEDALRQSHWWNSSGLDFSKRCQWDGILCAYGRILAIERPHLSASRPRLDNMNWTAFPNLETIDLEGMGLEGNIPTKIAGLQKLTDLDLSNNSLTGELPTTLANLTRLQYFSISKNFISGVVPWCLSHMNSLIFIDLSTNNLSGLIPSSIGNLSNLETLDLSANNLHGPILTSLMGHMNGLKYINLSTNNFSGQIPSNIGNLSNLWHLDLGINNLHGPIPISLYKLTKLTRIHLRSNHISGFIPPEIGDFEYLRSLDLSNNKIFGSLPLEIGHFLNLETLDLSHNMFIGVIPFSLGNLLSCYSLDLSFNSLTGNIPEELGRLMQTNINLSYNNLSGYVPREILCMFPHDILNGNTELIGLHKDLSCSNDFSNGTFVPAKKSKHYLRVILPLTIFLGILFVVGLMEAFVSDFGTARILDPDSSNQTVLVGTYGYIAPELAYTLIVTEKCDVYSFGVVALETIMGRHPGDLISSLSKTSNESILLKDALDSRLPLPLPKDAQDVILTVKVALACLHPTPKSRPSMQQVTRELSVSKLPLHIPFNNISLQHLLN 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0380 610 Pfam Leucine Rich Repeat 335 357 IPR001611 GO:0005515
Dere10g0380 610 Pfam Leucine Rich Repeat 312 332 IPR001611 GO:0005515
Dere10g0380 610 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Dere10g0380 610 Gene3D Transferase(Phosphotransferase) domain 1 412 598 - -
Dere10g0380 610 ProSiteProfiles Protein kinase domain profile. 215 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0380 610 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 231 429 - -
Dere10g0380 610 Pfam Protein kinase domain 467 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0380 610 Gene3D Ribonuclease Inhibitor 303 404 IPR032675 -
Dere10g0380 610 SUPERFAMILY L domain-like 80 404 - -
Dere10g0380 610 PRINTS Leucine-rich repeat signature 212 225 - -
Dere10g0380 610 PRINTS Leucine-rich repeat signature 143 156 - -
Dere10g0380 610 Gene3D Ribonuclease Inhibitor 51 205 IPR032675 -
Dere10g0380 610 Gene3D Ribonuclease Inhibitor 206 302 IPR032675 -
Dere10g0380 610 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515
Dere10g0380 610 SUPERFAMILY Protein kinase-like (PK-like) 463 598 IPR011009 -
Dere10g0380 610 FunFam Calmodulin-binding receptor kinase CaMRLK 117 230 - -
Dere10g0380 610 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 214 459 - -
Dere10g0380 610 SMART serkin_6 352 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0380 610 SMART LRR_typ_2 140 163 IPR003591 -
Dere10g0380 610 SMART LRR_typ_2 188 211 IPR003591 -
Dere10g0380 610 SMART LRR_typ_2 285 309 IPR003591 -
Dere10g0380 610 SMART LRR_typ_2 333 357 IPR003591 -
Dere10g0380 610 SMART LRR_typ_2 164 187 IPR003591 -
Dere10g0380 610 SMART LRR_typ_2 212 237 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0380 Dere-ChrDere10 6633738 6636216 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0380 464 589 Receptor kinase-like Gene Family AT5G62230 34.848 9.10e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere10g0380 Pkinase 1e-11 CL0016