Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0378 ATGGGAATCTCCATTAAGATTTGCATTCCGAAAAGAGAAGTAATAGTAATAGTGATAGTGTTGTGGAATGCCTTGGCCTTCTTCCCCTATCCTATTCTTGCCACCTCCACAAGCAACAAAACAACAAATAATTCTTCCTCCCTTCACTACACATTCATGGAAGACAATTTTAAAGAGGAAGAAGATGCTTTGCGCCAGAGCCACTGGTGGAATAGCAGTGGCCTCGATTTCTCCACACGTTGTCAATGGGATGGCATTGTCTGCAATGGAATGGGATTGGAGGGAAGCATACCAACCAAGATAACGGGTCTTCAAAAGCTCACTTATCTAGACTTGTCTTATAACAACCTGACGGGTGAGTTACCCACTACTCTTGCCAATCTCACTCAACTTCATGTGCCACCTGAAATTGGACGCCTCCTCAATCTTGAAGCTTTAGACCTCTCACAGAATATGCTAAATGGAAGTATACCCTCTCAAGTGGGTCGTCTTCTTTTTAGAGATGGCAACTTCAGTCATAACAGAATTGTTGGAGTGATTCCATTTAGTTTGGGTAATTTACCAAACAATTGTAGCTTGGATTTAAGCTTCAATAATCTCACAGGAAACATACCTAGAGAGCTTGGTACACTGAGGTACCTCAACTTGTCATACAACAATCTCAGTGGATATGTCCCAAGAGAAATTTATTGCTCTTTTCCTCAAGACATCTTAAATGGTAATAAGGAGTTACTTGGTCTACAAAAGAATATTTCTTGTTCAAGTGATACCTTTGTTCCTGCTAAAAAGTCAAAACATTACTTGAGGGCCATTCTTCCCTTGACAATTTTTCTTAGCATCTTGTTCGTTGTGGGTTTGATCAGTTCTCAATATTTAGGCAAGAGAAAAAAAATAGAGAAAAGGGTAGAAAAGAATGGAGACATATTCTCAATATGGAATTATGATGGAAAAATTGCATACGATGATATCATTAGAGCTACAGAAGACTTTGACATCAAGTATTGTATAGGAACCGGTGGTTATGGAAGTGTTTATAAGGCATTACTTCCTAGTGGCAGAATTGTTGCTTTGAAAAAACTTCATAGAGCGGAATCACAAGACGCATGCTTTGCGAGGAGTTTCTACAATGAGGTGAGGATGTTGACTGAAATTCGACACCGCAACATTGTGAAACTTCATGGTTATTGTTTGCATAATAAATGCATGTTTCTCATCTATGAATACATGGAAAGAGGAAGCCTATTCTATGTCTTGCATGATGATGTTGAAGCTAAAGAATTGAATTGGAGTAAGAGGGTGAATGCCATCATAGGAATAGCAAATGCTTTGTCCTACATGCATCATGACTGTACGCCAACAATTATCCACCGAGACATAACAACTAGTAATGTTCTGTTGAACACAAAGATGGAGGCCTTCGTCTCAGACTTTGGCACTGCTAGAATCCTTGATCCAGATTCCTCAAATCAAACTCTTCTAGTTGGTACATATGGTTATATTGCTCCAGAACTTGCATACACCTTGACAGTGACCGAAAAATGCGATGTTTATAGTTTTGGAGTAGTGGCATTAGAAACAATAATGGGAAGGCATCCAGGAGATTTAATCTCGTCTTTGTCCAAGACTAGTAATGAGAGCATACTATTAAAAGATGTCTTAGATTCACGTCTCCCTCTTCCATTGCCGAAAGATGCACAAGATGTGATTCTTACGGTCAAAGTAGCATTAGCATGCTTGCATCCTACACCTAAATCTCGGCCATCAATGCAGCAAGTCACTAGAGAGCTTTCAGTCTCCAAGTTGCCATTGCATATTCCTTTCACAAATATTTCACTCCAACATTTACTAAATTAA 1854 0.3921 MGISIKICIPKREVIVIVIVLWNALAFFPYPILATSTSNKTTNNSSSLHYTFMEDNFKEEEDALRQSHWWNSSGLDFSTRCQWDGIVCNGMGLEGSIPTKITGLQKLTYLDLSYNNLTGELPTTLANLTQLHVPPEIGRLLNLEALDLSQNMLNGSIPSQVGRLLFRDGNFSHNRIVGVIPFSLGNLPNNCSLDLSFNNLTGNIPRELGTLRYLNLSYNNLSGYVPREIYCSFPQDILNGNKELLGLQKNISCSSDTFVPAKKSKHYLRAILPLTIFLSILFVVGLISSQYLGKRKKIEKRVEKNGDIFSIWNYDGKIAYDDIIRATEDFDIKYCIGTGGYGSVYKALLPSGRIVALKKLHRAESQDACFARSFYNEVRMLTEIRHRNIVKLHGYCLHNKCMFLIYEYMERGSLFYVLHDDVEAKELNWSKRVNAIIGIANALSYMHHDCTPTIIHRDITTSNVLLNTKMEAFVSDFGTARILDPDSSNQTLLVGTYGYIAPELAYTLTVTEKCDVYSFGVVALETIMGRHPGDLISSLSKTSNESILLKDVLDSRLPLPLPKDAQDVILTVKVALACLHPTPKSRPSMQQVTRELSVSKLPLHIPFTNISLQHLLN 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0378 617 SMART LRR_typ_2 140 164 IPR003591 -
Dere10g0378 617 SMART LRR_typ_2 104 127 IPR003591 -
Dere10g0378 617 SMART LRR_typ_2 187 211 IPR003591 -
Dere10g0378 617 Gene3D Phosphorylase Kinase; domain 1 291 408 - -
Dere10g0378 617 SUPERFAMILY L domain-like 69 228 - -
Dere10g0378 617 Pfam Leucine Rich repeat 105 120 IPR001611 GO:0005515
Dere10g0378 617 Pfam Leucine Rich repeat 210 222 IPR001611 GO:0005515
Dere10g0378 617 SUPERFAMILY Protein kinase-like (PK-like) 310 596 IPR011009 -
Dere10g0378 617 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Dere10g0378 617 Gene3D Ribonuclease Inhibitor 51 132 IPR032675 -
Dere10g0378 617 FunFam MDIS1-interacting receptor like kinase 2 409 602 - -
Dere10g0378 617 PRINTS Leucine-rich repeat signature 140 153 - -
Dere10g0378 617 PRINTS Leucine-rich repeat signature 107 120 - -
Dere10g0378 617 FunFam Leucine-rich repeat receptor protein kinase EMS1 133 228 - -
Dere10g0378 617 PANTHER LEUCINE RICH REPEAT KINASE 2 91 601 - -
Dere10g0378 617 ProSitePatterns Tyrosine protein kinases specific active-site signature. 454 466 IPR008266 GO:0004672|GO:0006468
Dere10g0378 617 Gene3D Ribonuclease Inhibitor 133 255 IPR032675 -
Dere10g0378 617 Pfam Protein kinase domain 334 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0378 617 FunFam Leucine-rich repeat receptor protein kinase MSP1 293 408 - -
Dere10g0378 617 ProSiteProfiles Protein kinase domain profile. 330 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0378 617 Gene3D Transferase(Phosphotransferase) domain 1 409 602 - -
Dere10g0378 617 ProSiteProfiles Leucine-rich repeat profile. 106 129 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0378 Dere-ChrDere10 6549537 6552657 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0378 89 502 Receptor kinase-like Gene Family AT4G08850 43.891 1.58e-98 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere10g0378 Pkinase 1e-44 CL0016