LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g0365	ATGGCATCTGCTAGCCTTGGAAATGGTGGGGTCGGCAGTTCCAGGTCTGTTAATGGCTTCAGAGGTTCATCTAGTTCGGTGGATTGGCTTGGGAGGGAGATGCTTGAGATGAGGTTGAGGGACAAGGTGGACCATGATGAGGACAGAGAGAGTGAGCCTGACATCATTGATGGTGTGGGTGCTGAAACAGGACAAGTGATAAGAACCAGCATTGGTGGTCGAAATGGCCAATCTAAGCAGAATGTCAGTTACATAGCAGAACACGTTGTTGGAACAGGCTCTTTTGGTGTTGTTTTTCAGGCAAAATGCAGAGAAACTGGAGAGATTGTGGCCATAAAAAAGGTTCTCCAGGACAAGCGCTACAAAAATAGGGAGTTACAGATTATGCAAATGCTGGATCATCCGAATATTGTTGCCCTTAAGCATTGTTTCTTTTCAACAACTGACAAAGAAGAGCTTTACTTGAATCTTGTACTTGAGTATGTTCCTGAAACTGTTAACCGTATTGCAAGGACTTATAGCAGGATCAACCAGCGGATGCCTTTAATTTATGTTAAGCTTTACACCTACCAGATTTGCAGGGCTCTTGCATATATACATAATTGCATTGGAATATGCCATCGCGACATCAAACCTCAGAACTTACTTGTGAACCCACATACACATCAGCTGAAACTTTGTGATTTTGGAAGTGCAAAAATGTTGGTGAAAGGAGAACCAAATGTTTCTTACATCTGTTCAAGATACTATCGGGCTCCAGAACTTATTTTTGGTGCTACTGAGTATACAACTGCCATAGATATATGGTCAACTGGATGTGTAATGGCTGAATTACTTCTTGGACAGCCTTTGTTTCCGGGAGAAAGTGGAGTTGACCAACTAGTTGAAATCATAAAGGTTTTGGGAACTCCAACCAGGGAAGAGATAAAGTGCATGAACCCTAATTATACTGAATTTAAGTTTCCTCAGATAAAACCTCATCCGTGGCACAAGGTCTTTCAGAAGCGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCGAATTTGCGATGCACAGCTTTGGAAGCTTGCATTCATCCTTTCTTTGATGAATTGAGGGATCCAAACACCCGCCTTCCTAATGGCCGCCCACTTCCTCCTCTTTTTAATTTTAAAGCTCCAGAGCTCTCCGGTATACCACCTGATGTGATCAATCGTCTTATTCCAGAGCATGCTCGTAAGCAGAACTTATTTATGGCTTTGCACACCTAG	1269	0.4303	MASASLGNGGVGSSRSVNGFRGSSSSVDWLGREMLEMRLRDKVDHDEDRESEPDIIDGVGAETGQVIRTSIGGRNGQSKQNVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKEELYLNLVLEYVPETVNRIARTYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKMLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKAPELSGIPPDVINRLIPEHARKQNLFMALHT	422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g0365	422	FunFam	Glycogen synthase kinase-3 beta	68	163	-	-
	Dere10g0365	422	Gene3D	Phosphorylase Kinase; domain 1	69	163	-	-
	Dere10g0365	422	Gene3D	Transferase(Phosphotransferase) domain 1	164	412	-	-
	Dere10g0365	422	FunFam	Shaggy-related protein kinase kappa	164	412	-	-
	Dere10g0365	422	SUPERFAMILY	Protein kinase-like (PK-like)	83	395	IPR011009	-
	Dere10g0365	422	Pfam	Protein kinase domain	86	368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g0365	422	ProSitePatterns	Protein kinases ATP-binding region signature.	90	114	IPR017441	GO:0005524
	Dere10g0365	422	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	205	217	IPR008271	GO:0004672\|GO:0006468
	Dere10g0365	422	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	50	414	-	-
	Dere10g0365	422	CDD	STKc_GSK3	79	371	IPR039192	-
	Dere10g0365	422	ProSiteProfiles	Protein kinase domain profile.	84	368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g0365	422	SMART	serkin_6	84	368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g0365	Dere-ChrDere10	6438867	6444838	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g0365	90	376	Core Cell Cycle Gene Families	AT1G76540	34.915	5.14e-57	188

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Dere10g0365		Pkinase	1.1e-64	CL0016